DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17544 and acdh-6

DIOPT Version :9

Sequence 1:NP_001163015.1 Gene:CG17544 / 35213 FlyBaseID:FBgn0032775 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_498885.1 Gene:acdh-6 / 182112 WormBaseID:WBGene00015335 Length:408 Species:Caenorhabditis elegans


Alignment Length:342 Identity:75/342 - (21%)
Similarity:134/342 - (39%) Gaps:89/342 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 ALACYSPSLSVKIALGVGLFNNAIRAMGTEK-HQKYIEAAWNREVITCLAITELSHGSNTKSIRT 172
            |:.|.|..:||.:...:.  ..|:...|::. ..:::..:.|.::::.:|::|...||:..:|||
 Worm    99 AVDCGSIPMSVMVQSDMS--TPALAQFGSDSLRNRFLRPSINGDLVSSIAVSEPHAGSDVSAIRT 161

  Fly   173 TA-TYDPTTQEFVINTPDFEAAKCWVGNLGKTATVAMTFANLYTADGQNHGLHGFLIPIRDPKTL 236
            .| .|.   .:.:||     .:|.|:.| |..|..|....|  |::.:|  ||       ..|:|
 Worm   162 HARRYG---SDLIIN-----GSKMWITN-GDQADWACVLVN--TSNAKN--LH-------KNKSL 206

  Fly   237 LSYPGVLVGDIG-------EKCGLNGIDNGFVVFTNYRIPRDNLLNRTSDVTPEGVYESVFTEPG 294
            :..|   :..||       :|.|:...|...:.|.:.|:|...::.                |.|
 Worm   207 VCIP---LDSIGVHRSTPLDKLGMRSSDTVQLFFEDVRVPSSYIIG----------------EEG 252

  Fly   295 KVLGAALESFSAGR-----IGI--MQESANTLCSAAVIAVRYSAVRKQFGPERHGEEMAILEYQL 352
            :.....:..|:..|     :|:  :|:..|.       .:.|:..|..||       ..:|:.|.
 Worm   253 RGFAYQMNQFNDERLVTVAVGLLPLQKCINE-------TIEYARERLIFG-------KTLLDQQY 303

  Fly   353 HQYRIFPYLAAACVQKIATEELTSTYMEIIARSQADSNGFDVLTQNAAEIHALISSSKPLITWAA 417
            .|:|    ||....:..||..|  .|..::||.|.:            ::..|.:.:|..|...|
 Worm   304 VQFR----LAELEAELEATRSL--LYRTVLARCQGE------------DVSMLTAMAKLKIGRLA 350

  Fly   418 RDAIQEAREACGGHGYL 434
            |....:..:..||.|||
 Worm   351 RKVTDQCLQIWGGAGYL 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17544NP_001163015.1 AXO 16..670 CDD:173839 75/342 (22%)
PLN02443 18..687 CDD:178062 75/342 (22%)
acdh-6NP_498885.1 CaiA 23..396 CDD:224871 75/342 (22%)
Acyl-CoA_dh_N 29..140 CDD:280866 8/42 (19%)
ACAD 115..396 CDD:173838 70/326 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.