DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment fon and nup98

DIOPT Version :9

Sequence 1:NP_001163013.1 Gene:fon / 35211 FlyBaseID:FBgn0032773 Length:577 Species:Drosophila melanogaster
Sequence 2:NP_956979.2 Gene:nup98 / 777756 ZFINID:ZDB-GENE-040426-1180 Length:1814 Species:Danio rerio


Alignment Length:493 Identity:130/493 - (26%)
Similarity:187/493 - (37%) Gaps:139/493 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 AGYGGGYSGSFGAGVDGASAQVDDSALGKLESSYDSVGATESAEGASA-------GGLGGAVETL 106
            |.:||| :|.||.          .|..|:..|.:   |||....|:||       |||.|..:..
Zfish     8 APFGGG-TGGFGT----------SSTFGQPNSGF---GATPGGFGSSAFGTTNNTGGLFGNTQNK 58

  Fly   107 -GGSAGTNTIGAGVGSSFGSNFASGFGGQNAAS---FGAQNAAG----------FGAQNAASFGA 157
             ||..|::|....|.||..|.|  |||..:..|   ||:.|..|          |||...|:|| 
Zfish    59 PGGLFGSSTFSQPVTSSTSSGF--GFGATSGTSNSLFGSTNTGGGGLFSQQNNAFGANKPAAFG- 120

  Fly   158 QNAASFGSSFSSNAAF-QTSSASN-FGSTAAHQVGSNVEFADNANAGNKVDFGGVNAVDSSAQLL 220
                :||:|.||...| .|::||| ||.|:....||:...|  |..|..:.|   |....|..::
Zfish   121 ----NFGTSTSSGGLFGTTNTASNPFGGTSGSLFGSSSFTA--APPGTTIKF---NPPTGSDTMV 176

  Fly   221 SGVQTVQSVPTSEYYRHEKIVSTPQQVVYTIPGGSQRYVHHEERIVEQPTQVTQTVPVQTAHYYQ 285
            .|     .|.||...:|:.|.:..:               :|.:.:|:         ::...|..
Zfish   177 KG-----GVTTSINTKHQCITAMKE---------------YENKSLEE---------LRLEDYQA 212

  Fly   286 RKVTTTASAPQLVQPVASSRLTYGSNAAST-------FGSNAASNFGSNAATNFGSNAATNFGSN 343
            .:     ..|..:...|.:...:|:.|.:|       |||:|     .|...|||.|..|...|.
Zfish   213 GR-----KGPSNLPMAAGTGGLFGAAAPATPSTGTGLFGSSA-----PNTGFNFGQNKTTFGTST 267

  Fly   344 AAFNSQFGSSYGQNFQQNSQLSQLLSQTQQAARQQAALQAASANQVQAGSGYAAGSQGGFNSGYN 408
            .||.:..||.:.|..||           ||..:|.::|                     |....:
Zfish   268 GAFGTTTGSLFAQPQQQ-----------QQQQQQNSSL---------------------FKPFGS 300

  Fly   409 SAFNSGSQFGFNSASSLNSASSLNSASTGNSAALLSGSLLGGSQGSLLSGQVGGQQSLLSGSLLS 473
            :.....:.|.|.:.||:.|:|........|:||..:|.|.|.:..|..:|         .|:.:.
Zfish   301 ATTTQNNTFSFGNTSSMVSSSWCTKGLFANTAASQAGGLFGNTNTSTATG---------FGTGIF 356

  Fly   474 GQQNLGLGLNAAQTGQVVGASSVGAG-LSAGAGNLGSG 510
            ||.|.|.| |.. |..:.|....|.| .:..|.:.|||
Zfish   357 GQTNTGFG-NVG-TQNLFGNKPAGFGTTTTSAPSFGSG 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fonNP_001163013.1 None
nup98NP_956979.2 Nucleoporin_FG 39..133 CDD:290362 34/100 (34%)
Nucleoporin_FG 217..357 CDD:290362 43/185 (23%)
Nucleoporin_FG 324..>400 CDD:290362 23/80 (29%)
Nucleoporin2 741..881 CDD:282016
Nup96 1333..1626 CDD:288926
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.