DRSC/TRiP Functional Genomics Resources

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Protein Alignment fon and Nup58

DIOPT Version :9

Sequence 1:NP_001163013.1 Gene:fon / 35211 FlyBaseID:FBgn0032773 Length:577 Species:Drosophila melanogaster
Sequence 2:NP_650821.2 Gene:Nup58 / 42342 FlyBaseID:FBgn0038722 Length:546 Species:Drosophila melanogaster


Alignment Length:515 Identity:101/515 - (19%)
Similarity:157/515 - (30%) Gaps:196/515 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 DSVGATESAEGASAGGLGGAVET-----LGGSAGTNTIGAGVGSSFGSNFAS-----GFGGQNAA 137
            :::|...:|.||.|.|...|..|     .|.:..|.|.||...::  |.||:     .||...|.
  Fly     8 NAIGGATAATGAFAFGARPATTTAPPPSFGAATSTPTFGAAPATT--SLFAAPAATPAFGAPAAT 70

  Fly   138 -SFGA-QNAAGFGAQNAASFGAQNAASFGSSFSSNAAFQTSSASNFGSTAAHQVGSNVEFADNAN 200
             :||| .:..||||.:.|      |.:||::.::.|....::.|.||:.||...           
  Fly    71 PAFGAPASTPGFGATSTA------APAFGTAAATPAFGIPAATSAFGAPAATPA----------- 118

  Fly   201 AGNKVDFGGVNAVDSSAQLLSGVQTVQSVPTSEYYRHEKIVSTPQQVVYTIPGGSQRYVHHEERI 265
                  ||...|                              ||   .:..|..:..:       
  Fly   119 ------FGAAAA------------------------------TP---AFGAPAATPAF------- 137

  Fly   266 VEQPTQVTQTVPVQTAHYYQRKVTTTASAPQLVQPVASSRLTYGSNAASTFGSNAAS-------- 322
                     ..|..|:.:.....||...||             .|..||.||:.|.:        
  Fly   138 ---------GAPAATSAFGAPAATTAFGAP-------------ASTQASAFGAPAPAVGTVAPTF 180

  Fly   323 NFGSNA---------ATNFGSNAATNFGSNAAFNSQFGSSYGQNFQQNSQLSQLLSQTQQAARQQ 378
            :|.:.|         |..||:.|.|   :.||..:...|..|.......|               
  Fly   181 SFATPATSAPTTAPPAFGFGTTATT---AAAAMPASLSSGIGSFSFPKPQ--------------- 227

  Fly   379 AALQAASANQVQAGSGYAAGSQGGFNSGYNSA----FNSGSQFGFNSASSLNSASSLNSASTGNS 439
             |..|||.|               ||:...:|    ||:|.:.|..:|::......:.|...|.:
  Fly   228 -ATTAASLN---------------FNTTTTTATAQPFNTGLKLGTTNATTTLGGGGIFSKPAGQA 276

  Fly   440 AALLSGSLLGGSQGSLLSGQVGGQQSLLSGSLLSGQQNLGL----------------GLNAAQTG 488
            ||..:.:.:|          :||.....:...|...:..|:                ||.|....
  Fly   277 AAPAASTFVG----------LGGIDVTATQPKLGDNKQDGIKIKETQVPDEIIKTVDGLKAYIKQ 331

  Fly   489 QVVGASSVGAGLSAGAGNLGSGYRTKQWEKQSKWSSQNSYDSNGHVNNYKDLVTGESESV 548
            |...:|.:|...::...|:.......:|..|                |...||.|.::.:
  Fly   332 QKTISSDIGRTSTSKFTNVSHEITNLKWALQ----------------NMATLVEGSNQQI 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fonNP_001163013.1 None
Nup58NP_650821.2 PHA03247 <25..195 CDD:223021 50/256 (20%)
Nucleoporin_FG2 136..>525 CDD:374260 59/329 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0845
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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