DRSC/TRiP Functional Genomics Resources

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Protein Alignment dnt and Ntrk3

DIOPT Version :10

Sequence 1:NP_477341.2 Gene:dnt / 35207 FlyBaseID:FBgn0024245 Length:584 Species:Drosophila melanogaster
Sequence 2:NP_001257585.1 Gene:Ntrk3 / 29613 RGDID:3214 Length:864 Species:Rattus norvegicus


Alignment Length:690 Identity:147/690 - (21%)
Similarity:245/690 - (35%) Gaps:226/690 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 WQSLAGRGL-PYSINVVSSDQEVLP----------RPAINVSHSGEIPTTIQTWSIA-LKC--SG 146
            ||......| ..|:..:|:|...||          .|.|:|||   :..|::....| :.|  ||
  Rat   174 WQEQGEARLDSQSLYCISADGSQLPLFRMNISQCDLPEISVSH---VNLTVREGDNAVITCNGSG 235

  Fly   147 LKAAEVDVTVSLEVVLNRSLNNVTHLVFRRKKICLMNDSAED-------LSEDV---DDPQLLET 201
            ....:||..|:....:|....|:.........:.|:|.::||       ::|:|   .:..:..|
  Rat   236 SPLPDVDWIVTGLQSINTHQTNLNWTNVHAINLTLVNVTSEDNGFTLTCIAENVVGMSNASVALT 300

  Fly   202 VMLPPTGLITLVVGVSVAMGSVCLLLMIAYCVKGAANKRQHHQHGGQPMRTSSF----------- 255
            |..||.       .||:....|.|...|.:.|:|......|..:.|||:|.|..           
  Rat   301 VYYPPR-------VVSLVEPEVRLEHCIEFVVRGNPTPTLHWLYNGQPLRESKIIHMDYYQEGEV 358

  Fly   256 ------------------------------QRLNTH----------------------PP----- 263
                                          |.:|.|                      ||     
  Rat   359 SEGCLLFNKPTHYNNGNYTLIAKNALGTANQTINGHFLKEPFPESTDFFDFESDASPTPPITVTH 423

  Fly   264 --------CQSSMGSAAYMTPSII-------------------------------API----HGS 285
                    ...::|.||:....::                               :|:    ||.
  Rat   424 KPEEDTFGVSIAVGLAAFACVLLVVLFIMINKYGRRSKFGMKGPVAVISGEEDSASPLHHINHGI 488

  Fly   286 SLP--------------RKVPVSVEQQHPEELHRRISELT----VERCRVRLSSLLQEGTFGRVY 332
            :.|              .::||....|:..:.|......|    ::|..:.|...|.||.||:|:
  Rat   489 TTPSSLDAGPDTVVIGMTRIPVIENPQYFRQGHNCHKPDTYVQHIKRRDIVLKRELGEGAFGKVF 553

  Fly   333 RG-TYN--DTQDVLVKTVAQHASQMQVLL----LLQEGMLLYGASHPGILSVLGVSIEDHTTPFV 390
            .. .||  .|:|.::  ||..|.:...|.    ..:|..||....|..|:...||..:.  .|.:
  Rat   554 LAECYNLSPTKDKML--VAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDG--DPLI 614

  Fly   391 LYPALNNTRNLKQFLL------------DPACAR-TVTTIQIVMMASQLSMALDHLHSHGVVHKD 442
            :........:|.:||.            .|..|: .:...|::.:|||::..:.:|.|...||:|
  Rat   615 MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRD 679

  Fly   443 IATRNCVIDDQLRVKLSDSSLSRDLFPSDYN---------------------------------- 473
            :|||||::...|.||:.|..:|||::.:||.                                  
  Rat   680 LATRNCLVGANLLVKIGDFGMSRDVYSTDYYREGPYQKGPFSVSWQQQRLAASAASTLFNPSGND 744

  Fly   474 -CL----GDSENRPVKWMSLEALQHKQFSEASDSWAFGVLMWELCTSAKQPYAEVDPFEMEHYLK 533
             |:    |.....|::||..|::.:::|:..||.|:|||::||:.|..|||:.::...|:...:.
  Rat   745 FCIWCEVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTEVIECIT 809

  Fly   534 DGYRLAQPFNCPDELFTIMAYCWALLPAERPTFAQLQSCL 573
            .|..|.:|..||.|::.:|..||...|.:|....::...|
  Rat   810 QGRVLERPRVCPKEVYDVMLGCWQREPQQRLNIKEIYKIL 849

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dntNP_477341.2 WIF 46..182 CDD:128745 23/99 (23%)
Protein Kinases, catalytic domain 310..580 CDD:473864 85/327 (26%)
Ntrk3NP_001257585.1 ig 214..299 CDD:395002 19/87 (22%)
Ig strand B 227..231 CDD:409353 1/3 (33%)
Ig strand C 240..244 CDD:409353 2/3 (67%)
Ig strand E 266..270 CDD:409353 0/3 (0%)
Ig strand F 281..286 CDD:409353 0/4 (0%)
Ig strand G 294..297 CDD:409353 0/2 (0%)
IgI_TrKABC_d5 304..396 CDD:409360 18/98 (18%)
Ig strand A 305..311 CDD:409360 3/12 (25%)
Ig strand A' 313..316 CDD:409360 0/2 (0%)
Ig strand B 319..327 CDD:409360 2/7 (29%)
Ig strand C 330..337 CDD:409360 1/6 (17%)
Ig strand C' 340..343 CDD:409360 2/2 (100%)
Ig strand D 348..354 CDD:409360 0/5 (0%)
Ig strand E 358..366 CDD:409360 0/7 (0%)
Ig strand F 374..382 CDD:409360 0/7 (0%)
Ig strand G 385..393 CDD:409360 1/7 (14%)
PTKc_TrkC 532..857 CDD:270676 84/322 (26%)
LRRNT 31..>51 CDD:396168
LRR_8 103..160 CDD:404697
LRR 1 104..125
leucine-rich repeat 105..128 CDD:275378
LRR 2 128..149
leucine-rich repeat 129..151 CDD:275378
leucine-rich repeat 152..164 CDD:275378
LRRCT_2 163..208 CDD:465313 8/33 (24%)
Blue background indicates that the domain is not in the aligned region.

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