DRSC/TRiP Functional Genomics Resources

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Protein Alignment dnt and ntrk1

DIOPT Version :10

Sequence 1:NP_477341.2 Gene:dnt / 35207 FlyBaseID:FBgn0024245 Length:584 Species:Drosophila melanogaster
Sequence 2:XP_002939035.2 Gene:ntrk1 / 100489637 XenbaseID:XB-GENE-923001 Length:808 Species:Xenopus tropicalis


Alignment Length:595 Identity:144/595 - (24%)
Similarity:246/595 - (41%) Gaps:134/595 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 YVREGHINNYALNFIVPV----PA-NVKDISFTWQSLAGRGLPY-SINV-----VSSDQEVLPRP 121
            |...|..|.......:|:    |. |.::::...:::.|....: .|||     |.:.:|.:|: 
 Frog   244 YTEIGQSNGSETEIFLPLFNISPGFNKRNVTCRAENMVGPSEEHVQINVLFPAMVVALEEAIPQ- 307

  Fly   122 AINVSHSGEIPTTIQ-------TWS-----------IALKCSGLKAAEVDVTVSLEVVLNRSLN- 167
                 |....|.|:.       .|.           |.||.  ::.:|....:...:.||:..: 
 Frog   308 -----HHFCFPYTVDGNPKPEIRWQFNGHNLEMNDYIYLKT--VEESENSTAIHGCLYLNKPTHV 365

  Fly   168 ---NVTHLVFRRKKICLMNDSAEDL-SEDVDDPQLLE-----TVMLPPTG----LITLVV----- 214
               |.|.||:.     ::..::|.: |:.:|:|....     .|.|.|.|    ..|..|     
 Frog   366 NNGNYTILVWN-----MLGSASETVYSKFMDNPFSFNPEEPIPVSLSPEGGGNSTYTTTVETVEE 425

  Fly   215 ---GVSVAMG---SVCLLLMIAYCVKGAANKRQHHQHGG-----------QPMRTSSFQRLNTHP 262
               |||||:|   ..||.|::   :..|.||...|...|           ....:..|....| .
 Frog   426 NTFGVSVAVGLAVFACLFLLL---ILIALNKCGRHSKFGINRAAVLAQEDDLAMSLHFMNFGT-S 486

  Fly   263 PCQSSMGSAAYMTPSIIAPIHGSSLPRKVPVSVEQQHPEEL------HRRISELTVERCRVRLSS 321
            |..|:.|....|.|:.|                  ::|:..      |       ::|..:.|..
 Frog   487 PLTSAEGKLDGMKPNFI------------------ENPQYFCDACVQH-------IKRRDIVLKW 526

  Fly   322 LLQEGTFGRVYRGT-YNDTQD-----VLVKTVAQHASQMQVLLLLQEGMLLYGASHPGILSVLGV 380
            .|.||.||:|:... ||.|.:     |.||.: :.|::.......:|..||....|..|:...||
 Frog   527 ELGEGAFGKVFLAEFYNLTPENEKTLVAVKAL-KEATENARQDFQREAELLTVLQHEHIVKFYGV 590

  Fly   381 SIEDHTTPFVLYPALNNTRNLKQFL---------LDPACAR---TVTTIQIVMMASQLSMALDHL 433
            ..:..  |.::........:|.:||         ||....:   .:...|::.:|||::..:.:|
 Frog   591 CTDGE--PLIMVFEYMKHGDLNRFLRSHGPDAKILDNGNGQPYGQLNLTQMLQIASQIASGMVYL 653

  Fly   434 HSHGVVHKDIATRNCVIDDQLRVKLSDSSLSRDLFPSDYNCLGDSENRPVKWMSLEALQHKQFSE 498
            .|...||:|:|||||::.:.|.||:.|..:|||::.:||..:|.....|::||..|::.:::|:.
 Frog   654 ASLHFVHRDLATRNCLVGNNLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTT 718

  Fly   499 ASDSWAFGVLMWELCTSAKQPYAEVDPFEMEHYLKDGYRLAQPFNCPDELFTIMAYCWALLPAER 563
            .||.|:|||::||:.|..|||:.::...|....:..|.:|.:|..||.|::.||..||...|.:|
 Frog   719 ESDIWSFGVVLWEIFTYGKQPWYQLSNTEAIECITQGRQLERPRTCPTEVYNIMQGCWQREPQQR 783

  Fly   564 PTFAQLQSCL 573
            ....::.:.|
 Frog   784 LNIKEIHNKL 793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dntNP_477341.2 WIF 46..182 CDD:128745 27/146 (18%)
Protein Kinases, catalytic domain 310..580 CDD:473864 83/282 (29%)
ntrk1XP_002939035.2 LRR_8 97..156 CDD:404697
leucine-rich repeat 99..122 CDD:275378
leucine-rich repeat 123..145 CDD:275378
LRRCT_2 157..201 CDD:465313
Ig 211..292 CDD:472250 8/47 (17%)
Ig strand B 220..224 CDD:409353
Ig strand C 233..237 CDD:409353
Ig strand E 257..261 CDD:409353 0/3 (0%)
Ig strand F 272..277 CDD:409353 0/4 (0%)
Ig strand G 285..288 CDD:409353 0/2 (0%)
Ig 295..390 CDD:472250 19/107 (18%)
Ig strand B 310..314 CDD:409353 0/3 (0%)
Ig strand C 323..327 CDD:409353 0/3 (0%)
Ig strand E 355..359 CDD:409353 0/3 (0%)
Ig strand F 369..374 CDD:409353 2/4 (50%)
Ig strand G 382..385 CDD:409353 1/2 (50%)
PTKc_TrkA 516..795 CDD:270674 84/288 (29%)
Blue background indicates that the domain is not in the aligned region.

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