DRSC/TRiP Functional Genomics Resources

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Protein Alignment gammaTub37C and Tube1

DIOPT Version :9

Sequence 1:NP_001260565.1 Gene:gammaTub37C / 35199 FlyBaseID:FBgn0010097 Length:457 Species:Drosophila melanogaster
Sequence 2:NP_082282.1 Gene:Tube1 / 71924 MGIID:1919174 Length:475 Species:Mus musculus


Alignment Length:509 Identity:135/509 - (26%)
Similarity:248/509 - (48%) Gaps:95/509 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SEIITLQLGQCGNQIGFEFWKRLCLEH-GISPDGVLEDFATDGQDRKDVFFYQAD-----DNHYI 61
            ::.:.:|:||||||||..||.....|| .::..|:.:|..:.       ||...|     |...|
Mouse     2 TQSVVVQVGQCGNQIGCCFWDLALREHAAVNQKGIYDDAISS-------FFRNVDTRAVGDGGSI 59

  Fly    62 ---------PRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASGFSQ-GEKVQE 116
                     .||||||:|..|:|.|:..|...:::.:.:....  .|:|||||.|... |...:|
Mouse    60 SKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDI--SGSGNNWAVGHKVFGCLYRE 122

  Fly   117 EVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDV 181
            ::.:.|.:.|:..|.|:.|.:.||:.||||||:|:::|:.|.:.||:......:|:|:.::  ||
Mouse   123 QILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSED--DV 185

  Fly   182 VVQPYNSILTLKRLTKCADSVVVLDNTAL---------------------------NRIATERLH 219
            :..||||:|.:|.|.:.||.|:.:||.:|                           :.:...:.|
Mouse   186 ITSPYNSMLAMKELNEHADCVLPIDNQSLFDIISKIDLVVNSGKLGSAVKPKSLITSNMGAVKKH 250

  Fly   220 IQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKT 284
            .:.| |..:||:|:.::...|::.|:...:|.:|..::.:|:|.|:||:|::..|||.:..:...
Mouse   251 HKKP-FDAMNNIVANLLLSLTSSARFEGSLNMDLNEISMNLVPFPKLHYLVSSLTPLYTLADVNI 314

  Fly   285 SVRKTTVLDVM--------RRLLQ--PKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQ 339
            ..|:   ||.|        .:|:|  |::.:            :::...|::|.|..|.:.::::
Mouse   315 PPRR---LDQMFSDAFSKDHQLIQADPRHSL------------YLACALIVRGNVQISDLRRNIE 364

  Fly   340 RIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLRKRNA 404
            |:  :....|:.|.....:.:| .|.|.|..:|.:  |.:||:|.:...|.....::.:|.|:.|
Mouse   365 RL--KPALQFVSWNQEGWKTSL-CSVPPVGHSHSL--LALANNTCVKPTFMELRERFTRLYKKKA 424

  Fly   405 FLDNFRR-ESMFQDDLTELDIARDTVDCLVQEY---EAATQI---DYPQWSPAV 451
            .|.::.: :.|.:...||   |..::..|:|||   :|...:   |.|:.|.|:
Mouse   425 HLHHYLQVDGMEESTFTE---AVSSLSALIQEYSDLDATKSLPVPDVPRLSVAL 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaTub37CNP_001260565.1 PLN00222 1..447 CDD:215108 133/503 (26%)
gamma_tubulin 4..436 CDD:276957 128/485 (26%)
Tube1NP_082282.1 epsilon_tubulin 2..457 CDD:276959 130/489 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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