DRSC/TRiP Functional Genomics Resources

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Protein Alignment gammaTub37C and tubd1

DIOPT Version :9

Sequence 1:NP_001260565.1 Gene:gammaTub37C / 35199 FlyBaseID:FBgn0010097 Length:457 Species:Drosophila melanogaster
Sequence 2:NP_001002093.1 Gene:tubd1 / 415183 ZFINID:ZDB-GENE-040625-73 Length:446 Species:Danio rerio


Alignment Length:459 Identity:127/459 - (27%)
Similarity:218/459 - (47%) Gaps:82/459 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDGQDRK-------DVFFYQADDNHYIP 62
            :::|||||||||||.|.:            .|:.| .::|.:||       :.||||......:.
Zfish     3 VVSLQLGQCGNQIGHELF------------SVISD-DSNGPNRKKYKQCSDERFFYQNSAGELVA 54

  Fly    63 RAVLIDLEPRVINNIMTSPYSK----LYNQENVFLSKHGGGAGNNWASGFS-QGEKVQEEVFDIL 122
            |:||:|:||:||:..:... ||    .|..:..|..|.  |:|||||:||. .|.:.:|:|.|::
Zfish    55 RSVLVDMEPKVISQALAKA-SKSGRWRYGDKAHFSQKQ--GSGNNWANGFCVHGPRHKEDVEDLV 116

  Fly   123 DREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYN 187
            ..|.:..|.|.|.....|:|||||||:|:|:.:||.:.:|:..|.....:|.  ...:|:||.||
Zfish   117 RMEVERCDRLAGIFTMMSVAGGTGSGVGTYITQRLRDLYPQSFILNQVTWPY--GAGEVIVQNYN 179

  Fly   188 SILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMS---LSTTTLRYPSYM 249
            |:|||..|.:.:|:::|.:|..:::|.::.::|:..:.:.||.::|..::   ....|...|.|.
Zfish   180 SVLTLSHLYQLSDAILVHENDTVHKICSQLMNIKHISISDINKVISHQLASVLQPVYTAHSPDYY 244

  Fly   250 NNNLIG-LTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQ 313
            :.|.|| |..||:..|:...|.....|.||......||.....|  ::.|.|   |::::...::
Zfish   245 SRNPIGELLTSLVCHPEYKLLSLCNIPQMSSTSLAYSVFNWPGL--LKHLRQ---MLIASARMEE 304

  Fly   314 SRQCFVSILNII-QGEVDPSQV-HKSLQRIRERKLAN----------------------FIPWGP 354
            .....|::.::: .|....:.: |||.    ...|||                      ::||..
Zfish   305 GIDWTVNVPSVVLSGAESVTNIRHKSF----NSSLANLLILRGKDVSTAVTDGFKDPLLYVPWLK 365

  Fly   355 ASIQVALPRSSPYVQSAHKVSGLMMANHTG----ISSLFKRA---------LAQYDKLR-KRNAF 405
            |....: ..|||...:.::.|..:::|...    :.::.::|         :.||.|.. ....|
Zfish   366 AENSFS-TWSSPIPFNGYEKSATLVSNSQSLLKPLDNIVRKAWNMFASRAYIHQYTKFGISEEDF 429

  Fly   406 LDNF 409
            ||:|
Zfish   430 LDSF 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaTub37CNP_001260565.1 PLN00222 1..447 CDD:215108 127/459 (28%)
gamma_tubulin 4..436 CDD:276957 127/459 (28%)
tubd1NP_001002093.1 delta_zeta_tubulin-like 2..445 CDD:276958 127/459 (28%)
COG5023 3..443 CDD:227356 127/459 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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