DRSC/TRiP Functional Genomics Resources

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Protein Alignment gammaTub37C and tuba4l

DIOPT Version :9

Sequence 1:NP_001260565.1 Gene:gammaTub37C / 35199 FlyBaseID:FBgn0010097 Length:457 Species:Drosophila melanogaster
Sequence 2:NP_956089.1 Gene:tuba4l / 327377 ZFINID:ZDB-GENE-030131-5588 Length:449 Species:Danio rerio


Alignment Length:449 Identity:142/449 - (31%)
Similarity:239/449 - (53%) Gaps:20/449 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDGQDRK-DVFFYQADDNHYIPRAVLI 67
            |.|::.:||.|.|:|...|:..|||||..|||.:.|.:....|.. ..||.:.....|:||||.|
Zfish     3 ECISIHIGQAGIQMGNSCWELYCLEHGFQPDGTIVDSSRSLADSSFGTFFSETGAGKYVPRAVFI 67

  Fly    68 DLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDS 131
            ||||.|::.|....|.:||:.|.:...|.  .|.||:|.| ::.|:::.:.|.|.:.:.||....
Zfish    68 DLEPTVVDEIRNGHYRQLYHPEQLISGKE--DAANNYARGHYTIGKEIVDSVLDRMRKMADQCTG 130

  Fly   132 LEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLT 196
            |:||::.||..||||||..|.::||||..:.||....:||:| ..::|..||:|||||||.....
Zfish   131 LQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYP-APQVSTAVVEPYNSILTTHTTL 194

  Fly   197 KCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMNNNLIGLTASLI 261
            :.:|...::||.|:..|....|.|:.|::|.:|.|::.|:|..|.:||:...:|.:|.....:|:
Zfish   195 EHSDCSFMVDNEAIFDICKRNLDIERPSYTNLNRLIAQIVSSITASLRFDGALNVDLTEFQTNLV 259

  Fly   262 PTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQPKNMMVSALTDKQSRQCFVSILNIIQ 326
            |.|::||.:..|:|::|  ..|....:.:|.::.....:|.|.||..   ...|..:::...:.:
Zfish   260 PYPRIHFPLVTYSPIIS--AEKAYHEQLSVPEITNACFEPANQMVKC---DPRRGKYMACCLLYR 319

  Fly   327 GEVDPSQVHKSLQRIRERKLANFIPWGPASIQVALPRSSPYVQSAHKVSGL-----MMANHTGIS 386
            |:|.|..|:.::..|:.|:...|:.|.|...:|.:....|.|.....::.:     |::|.|.|:
Zfish   320 GDVVPKDVNAAIANIKTRRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 384

  Fly   387 SLFKRALAQYDKLRKRNAFLDNFRRESMFQDDLTELDIARDTVDCLVQEYE--AATQID 443
            ..:.|...::|.:..:.||:..:..|.|.:.:.:|   ||:.:..|.::||  ||...|
Zfish   385 EAWGRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE---AREDMAALEKDYEEVAADSTD 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gammaTub37CNP_001260565.1 PLN00222 1..447 CDD:215108 142/449 (32%)
gamma_tubulin 4..436 CDD:276957 137/438 (31%)
tuba4lNP_956089.1 PTZ00335 1..449 CDD:185562 142/449 (32%)
alpha_tubulin 2..434 CDD:276955 139/441 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5023
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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