DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and rnf207b

DIOPT Version :9

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001188378.1 Gene:rnf207b / 568322 ZFINID:ZDB-GENE-080227-9 Length:634 Species:Danio rerio


Alignment Length:540 Identity:91/540 - (16%)
Similarity:160/540 - (29%) Gaps:194/540 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   171 SANGSPPRCTACKSK----CSDAVAKCFECQSYLCANCV---TAHEFMHC-FNGHNVCLIKGFEA 227
            |||..|..|..|:.:    |      ..:|....||:|:   .|...:.| ..||. .::||..|
Zfish    17 SANCHPLVCHLCQEQYEHPC------LLDCYHTFCASCLRGRVADSRLTCPVCGHQ-SVVKGINA 74

  Fly   228 STTGTPLSVGSPSNNPASNEFKYASSLTMMLQQQQQLDSQQQQQQQQLLPAQPMSQLSKIVLAAA 292
                                                            ||  |..:|.|.::.::
Zfish    75 ------------------------------------------------LP--PEDRLLKFLVDSS 89

  Fly   293 AQANSQEQQREDSIYGSLHPQQQQQQQQQQQRQLFCPRHKQELLKFSCRTCCILVCKECIVLEHS 357
            |.:       |:::             |.....|.|.:...:.: :.|.|||..:|::|....|.
Zfish    90 ADS-------EETV-------------QCANCDLECKKQDVDAM-YYCNTCCQPLCRDCRETTHK 133

  Fly   358 TGLHELENVQSPGMTTSTG--------------STANESAL------------------------ 384
            ..:.....:.|....|...              ||..:|.|                        
Zfish   134 AKMFSRHEIVSLAKRTKEAHKKCALHEEFYIMFSTEKKSMLCINCFRDMQVESRAHCIDIETAYI 198

  Fly   385 -------QTLLAD-------------MRGKIGEIVGIAGNSDQNLTKVKLQYQKAHNELNETHQF 429
                   |.:||.             ::..|||   :..|.|:..:.:...:.....:|.|..:.
Zfish   199 QGCEKLDQAVLAVKELQMSAREAIILLKAMIGE---VRANVDEEESAICTLFSNMQEKLAERKKI 260

  Fly   430 F---ASMLDERKTELLKE--------LETLY------TAKVNSNNSWQQRSRDLIDKGLATCEAV 477
            .   |....|.|....||        |.||.      :|.::|.|.:     :.:|.|....|.:
Zfish   261 LLKAARSQHEEKERTFKEQLSHLAALLPTLQVHLVTCSAFLSSANKF-----EFLDMGYQLMERL 320

  Fly   478 ERSPAPPSSLL-TEALLLRKSLEQQLQTGIQEMQLPFEIEFMSNYQSIQAGVRNTFGYIRANSS- 540
            ::....|..|. |::..:......:....::.:.|..:...||...|:...:.|..|.::::.| 
Zfish   321 KKIVKLPHRLRPTQSSKINTEYRSEFARCLEPLLLLGQRRSMSTTGSVALALGNASGLMQSSLSV 385

  Fly   541 ---DGGPTGMSLTSNGHGKQPPIARPTQSASNSSASSAGSGHHGHHQQSHHHGHHNHHQTAH--- 599
               ....:.|||.|:      .:.|||.....|:......|......: |...:.|.::|..   
Zfish   386 QCHSPAMSDMSLCSS------VVRRPTSHRYISTKVLLAKGGETPFME-HCCNYENSYRTLQTEI 443

  Fly   600 ----------HQQLQAQSSL 609
                      |:.|....||
Zfish   444 QKLKDQVQEIHRDLTKHHSL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 BBOX 176..222 CDD:197662 12/53 (23%)
zf-B_box 328..366 CDD:279037 8/37 (22%)
NHL_brat_like 760..1030 CDD:271329
NHL repeat 783..819 CDD:271329
NHL repeat 830..871 CDD:271329
NHL repeat 874..910 CDD:271329
NHL repeat 914..954 CDD:271329
NHL repeat 959..997 CDD:271329
NHL repeat 1002..1027 CDD:271329
rnf207bNP_001188378.1 RING 25..63 CDD:214546 9/43 (21%)
zf-B_box 98..145 CDD:279037 9/47 (19%)
iSH2_PI3K_IA_R 202..310 CDD:304922 21/115 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 575..634
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D489543at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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