DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and trim32

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001107066.1 Gene:trim32 / 562764 ZFINID:ZDB-GENE-060428-1 Length:663 Species:Danio rerio


Alignment Length:865 Identity:162/865 - (18%)
Similarity:262/865 - (30%) Gaps:329/865 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 CANCVTAH-------EFMHCFNGHNVC--LIKGFEASTTGTPLSVGSPSNNPASNEFKYASSLTM 256
            |..|:..:       :.:.|  ||:||  .::...|||..   .|..|          :.|.::.
Zfish    18 CPICLETYNQDQLRPKLLQC--GHSVCRQCLEKLLASTIN---GVRCP----------FCSKVSR 67

  Fly   257 MLQQQQQLDSQQQQQQQQLLPAQPMSQLSKIVLAAAAQANSQEQQREDSIYGSLHPQQQQQQQQQ 321
            |....|..|:              ::.|..|..|:|..:|                         
Zfish    68 MSSISQLADN--------------LTVLKIIDCASACSSN------------------------- 93

  Fly   322 QQRQLFCPRHKQELLKFSCRTCCILVCKECIVLEHSTGLHELENVQSPGMTTSTGSTANESALQT 386
              ..|.|...|..|.:..|..|.|::|..|....|....|.::.::       ..:......:..
Zfish    94 --MGLMCKSCKNRLPRQYCCDCSIVLCDICKNEGHQRQGHVVQAIR-------MAAELRRKDIGA 149

  Fly   387 LLADMRGKIGEIVGIAGNSDQNLTK-VKLQYQKAHNELNETHQFFASMLDERKTELLKELETLYT 450
            .|:|:|..:|.|.......| |:|| ::::|:....|.             .|.||..:.|.   
Zfish   150 KLSDLREAMGNIQKKKAAID-NVTKSLRMKYKAVQQEY-------------AKAELRLQEEL--- 197

  Fly   451 AKVNSNNSWQQRSRDLIDKGLATCEAVERSPAPPSSLLTEALLLRKSLEQQLQTGIQEMQLPFEI 515
                      .|||......||..|.:            .|.:|.   ||.....|.|:|:....
Zfish   198 ----------GRSRRAFAASLAEIEKL------------NAQILE---EQTYLLNIAEVQVVSRC 237

  Fly   516 EFMSNYQSIQAGVRNTFGYIRANSSDGGPTGMSLTSNGHGKQPPIARPTQSASNSSASSAGSGHH 580
            ::::                           |.:      ||..||...:.::|.          
Zfish   238 DYLT---------------------------MRI------KQTDIALLEEGSNND---------- 259

  Fly   581 GHHQQSHHHGHHNHHQTAHHQQLQAQSSLHGLGLGLSGASLLDSSSSAGGAVGAFSNGGLLLGGR 645
                              ..:.|..:::| .:.|.|....|:...:|....||..:.       :
Zfish   260 ------------------EEEDLDLKTNL-PVVLKLQDPELVKIENSKSLEVGQLTT-------K 298

  Fly   646 DRNALAVEQHFGELMPKRGGGGYTGSNGSATSAVAHYNPYEKWSNGGSDNLFSSVTSGVSGSSAV 710
            ..|....|:..|...|            :||||     |.:.:.:   .::..:|...|..|.. 
Zfish   299 PCNVNVEEEEDGLDFP------------TATSA-----PLDIYRD---IDMVPAVEEAVCASPG- 342

  Fly   711 ADAFASLSAVGGSVVSGAGAGGSTVSSESLLDLTNKLLSATIYPPKSQIKRQKMIYHCKFGEFGV 775
              :|.|.|..||....||..|       .|.....|:                   .||    |.
Zfish   343 --SFKSKSVDGGGPSPGASGG-------QLCQFVKKM-------------------GCK----GN 375

  Fly   776 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-------------RFKFQF---------- 817
            :.|.|..|..:.|..|.:::|||..|:|||||:::|             .|...|          
Zfish   376 LPGMFNLPVSICVTLQGEVLVADRGNYRIQIFNRKGFQREIRRNPSSIDNFVLSFLGADLPNLIP 440

  Fly   818 --------GECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-------GQFV---- 863
                    |..|..|:   |.|.|.|....|..|.     .|:.|:...:       ||||    
Zfish   441 LSIAITAQGLIGVTDN---YDNSVKVYTTDGHCIA-----CHKNQLIKPWGIAAMPSGQFVVSDV 497

  Fly   864 -----------RKFGATILQ------HPRGVTVDNKGRIIVVE------------------CKVM 893
                       |..|.....      .|:.||.|:.|.:...:                  ..:.
Zfish   498 EGGKLWCLAVDRNVGVVNYNRLCSAVRPKFVTCDSSGTVYFTQGLGLNIENRHNEHHLEGGFSIG 562

  Fly   894 RVIIFDQNGNVL-HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY--LRQIGGEG 955
            .|.:..|.|..| |.|..::......|:.|:...::.::|:....:..|..||.|  |.|   ||
Zfish   563 SVGMDGQLGKQLSHFFSETEDFRCITGMCVDSNGDLIVTDSGRKEILQFPKEGGYNILIQ---EG 624

  Fly   956 ITNYPIGVGINSNGEILIAD 975
            :| .|:||.:...|::|:.|
Zfish   625 LT-CPVGVAVTQKGQLLVLD 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871 7/29 (24%)
Bbox2_BRAT-like 326..366 CDD:380856 11/39 (28%)
CC_brat-like 382..503 CDD:467844 25/121 (21%)
NHL_brat_like 760..1030 CDD:271329 66/296 (22%)
NHL repeat 783..819 CDD:271329 15/66 (23%)
NHL repeat 830..871 CDD:271329 13/62 (21%)
NHL repeat 874..910 CDD:271329 11/54 (20%)
NHL repeat 914..954 CDD:271329 9/41 (22%)
NHL repeat 959..997 CDD:271329 6/17 (35%)
NHL repeat 1002..1027 CDD:271329
trim32NP_001107066.1 RING-HC_TRIM32_C-VII 16..65 CDD:438249 13/61 (21%)
Bbox1_TRIM32_C-VII 96..136 CDD:380864 11/39 (28%)
EnvC 138..>250 CDD:443969 31/186 (17%)
NHL_TRIM32_like 371..653 CDD:271331 66/289 (23%)
NHL repeat 383..423 CDD:271331 13/39 (33%)
NHL repeat 440..478 CDD:271331 10/45 (22%)
NHL repeat 481..521 CDD:271331 6/39 (15%)
NHL repeat 522..573 CDD:271331 8/50 (16%)
NHL repeat 586..618 CDD:271331 6/31 (19%)
NHL repeat 626..652 CDD:271331 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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