DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brat and trim3a

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:XP_686295.4 Gene:trim3a / 562489 ZFINID:ZDB-GENE-080522-4 Length:774 Species:Danio rerio


Alignment Length:774 Identity:197/774 - (25%)
Similarity:306/774 - (39%) Gaps:188/774 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 LFCPRHKQELLKFSCRTCCILVCKECIVLEHSTGLHELENVQSPGMTTSTGSTANESALQTLLAD 390
            |.||.|:.::::|.|.:|...:|.||...||.      |:|..|   .......:::||:..|..
Zfish   121 LSCPNHEGKVMEFYCESCETAMCLECTEGEHR------EHVTVP---LRDVLEQHKAALKNQLDA 176

  Fly   391 MRGKIGEI---VGIAGNSDQNLTKVKLQYQKAHNELNETHQFFASMLDERKTELLKELETLYTAK 452
            :|.::.::   :.:.....:.||..|   .:|..|::.|.:.....|.:|||.|:.:||.:.:.|
Zfish   177 IRNRLPQLTAAIELVNEISKQLTDRK---NEAVTEISNTFEELEKALHQRKTTLITDLENICSTK 238

  Fly   453 VNSNNSWQQRSRDLIDKGLATCEAVERSPAPPSSLLTEALLLRKSLEQQLQTGIQEMQLPFEIEF 517
                                                      :|.|:.||..            .
Zfish   239 ------------------------------------------QKVLQGQLAA------------L 249

  Fly   518 MSNYQSIQAGVRNTFGYIRANSSDGGPTGMSLTSNGHG-KQPPIARPTQSASNSSASSAGSGHHG 581
            |...::||    ::..:.....:.|.||.:.|.....| :...:||                 |.
Zfish   250 MQGKENIQ----SSCSFTEQALNHGSPTEVLLVQKQMGERMGALAR-----------------HA 293

  Fly   582 HHQQSHHHGHHNHHQTAHHQQLQAQSSLHGLGLGLSGASLLDSSSSAGGAVGAFSNG--GLLLGG 644
            ..:|.|.:||           |..|....||...:....:|.::||.|....|...|  ..::|.
Zfish   294 FPEQPHENGH-----------LDCQVETEGLRRSIQNLGVLLTTSSVGHTSVATGEGLRHAVVGQ 347

  Fly   645 RDRNALAVEQHFGELMPKRGGGG----YTGSNGSATSAVAHYNP-------YEKWSNGGSDNLFS 698
            .....:..:...|||: |.|...    .:|::|..|......|.       |...|.|  :..||
Zfish   348 NTTVTVTTKDKDGELV-KTGNAALRAQISGADGGVTETDVTDNKNGTYEIGYTLRSEG--EFSFS 409

  Fly   699 SVTSG--VSGSS------AVADAFASLSAVGGSVVS---GAGAGG----STVSSESLLDLTNKLL 748
            .:..|  |.||.      ...||..|...|...|.|   |.||||    ..|...|.:..|.|  
Zfish   410 VLLYGRHVRGSPFRLRAVKACDAPQSPDDVKRRVKSPGGGGGAGGHVRQKAVRRPSSMYSTTK-- 472

  Fly   749 SATIYPPKSQIKRQKMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF 813
                  .|......::|:  :.|..|...|:|:...|::..:...|:|||:||..||:|..:|:|
Zfish   473 ------KKENPIEDELIF--RVGTRGRERGEFSNLQGISTTSSGRIVVADSNNQCIQVFSNDGQF 529

  Fly   814 KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVT 878
            |.:||..|:...||..|..|||..| |||||.:.. ...:.|::..|:|..|.||..|..|:||.
Zfish   530 KLKFGVRGRSPGQLQRPTGVAVDMN-GDIIVADYD-NRWLSIFSPDGKFKNKIGAGRLMGPKGVA 592

  Fly   879 VDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC--SKHLEF----------------------PNG 919
            ||..|.||..:.|...|.||..||.::.|||.  :...:|                      |:.
Zfish   593 VDKNGHIITADNKACCVFIFQSNGKLVTKFGAKGTSERQFADKSAPNTPTEPKQSKSGPAFSPHF 657

  Fly   920 VVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG----GEGITNYPIGVGINSNGEILIADNHNNF 980
            |.:|:|.||.::|...|.|||:|.:|::|.:.|    |.|..|.|.||.::.||.|::|| ..|.
Zfish   658 VAINNKNEIVVTDFHNHSVKVYNADGEFLFKFGSHGEGNGQFNAPTGVAVDGNGNIIVAD-WGNS 721

  Fly   981 NLTIFTQDGQLISALESKVKHAQCFD-------VALMDDGSVVLA-SKDYRLYIYRYVQ 1031
            .:.:|...|..:|.:.:..      |       :||..||.|.:| |.::...:|||:|
Zfish   722 RIQVFDSSGSFLSYINTTA------DPLYGPQGLALTSDGHVAVADSGNHCFKVYRYLQ 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871
Bbox2_BRAT-like 326..366 CDD:380856 13/39 (33%)
CC_brat-like 382..503 CDD:467844 21/123 (17%)
NHL_brat_like 760..1030 CDD:271329 98/305 (32%)
NHL repeat 783..819 CDD:271329 14/35 (40%)
NHL repeat 830..871 CDD:271329 16/40 (40%)
NHL repeat 874..910 CDD:271329 16/35 (46%)
NHL repeat 914..954 CDD:271329 16/65 (25%)
NHL repeat 959..997 CDD:271329 12/37 (32%)
NHL repeat 1002..1027 CDD:271329 8/32 (25%)
trim3aXP_686295.4 RING-HC_TRIM3 21..68 CDD:438424
Bbox_SF 120..161 CDD:469587 15/48 (31%)
CC_brat-like 166..286 CDD:467844 30/180 (17%)
IG_FLMN 333..429 CDD:214720 21/98 (21%)
NHL_TRIM2_like 481..774 CDD:271330 99/303 (33%)
NHL repeat 499..538 CDD:271330 15/38 (39%)
NHL repeat 546..585 CDD:271330 16/40 (40%)
NHL repeat 588..625 CDD:271330 17/36 (47%)
NHL repeat 632..693 CDD:271330 16/60 (27%)
NHL repeat 699..741 CDD:271330 13/48 (27%)
NHL repeat 744..770 CDD:271330 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.