DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and Trim3

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001347354.1 Gene:Trim3 / 55992 MGIID:1860040 Length:750 Species:Mus musculus


Alignment Length:831 Identity:204/831 - (24%)
Similarity:333/831 - (40%) Gaps:213/831 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 QQQQLLPAQPMSQL-SKIVLAAAAQANSQEQQREDSIYGSLHPQQQQQQQQQQQRQLFCPRHK-- 332
            :|..:||.|.:|.| :...:::..:|..|..:      |:..|:..........|.|.||.|:  
Mouse    63 RQTSILPEQGVSALQNNFFISSLMEAMQQAPE------GAHDPEDPHPLSAVAGRPLSCPNHEGK 121

  Fly   333 ----QELLKFSCRTCCILVCKECIVLEH-STGLHELENVQSPGMTTSTGSTANESALQTLLADMR 392
                .:.::|.|..|...:|.||...|| ..|...|.:|..          .:::|||..|..:|
Mouse   122 EPLYHQTMEFYCEACETAMCGECRAGEHREHGTVLLRDVVE----------QHKAALQRQLEAVR 176

  Fly   393 GKIGEI---VGIAGNSDQNLTKVKLQYQKAHNELNETHQFFASMLDERKTELLKELETLYTAKVN 454
            |::.::   :.:.|...|.|.:.|.:   |..:::...:.....|.:||..|:.:||::..||  
Mouse   177 GRLPQLSAAIALVGGISQQLQERKAE---ALAQISAAFEDLEQALQQRKQALVSDLESICGAK-- 236

  Fly   455 SNNSWQQRSRDLIDKGL----ATC----EAVERSPAPPSSLLTEALLLRKSLEQQLQTGIQEMQL 511
              ....|...|.:.:|.    ::|    :|:....||      |.||:||.:.::| ..:.....
Mouse   237 --QKVLQTQLDTLRQGQEHIGSSCSFAEQALRLGSAP------EVLLVRKHMRERL-AALAAQAF 292

  Fly   512 P------FEIEFMSNYQSIQAGVRNTFGYIRANSSDGGPTGMSLTSNGHGKQPPIARPTQSASNS 570
            |      .::|.:.....::..|.|              .|..||::.                 
Mouse   293 PERPHENAQLELVLEVDGLRRSVLN--------------LGALLTTSA----------------- 326

  Fly   571 SASSAGSGHHGHHQQSHHHGHHNHHQTAHHQQLQAQSSLHGLGLGLSG--ASLLDSSSSAGGAVG 633
                                      |||    :..::..||...|.|  |||..::        
Mouse   327 --------------------------TAH----ETVATGEGLRQALVGQPASLTVTT-------- 353

  Fly   634 AFSNGGLLLGGRDRNALAVEQHFGELMPKRGGGGYTGSNG--SATSAVAHYNPYEKWSNGGSDNL 696
                       :|::...|.....||..:     .||.:|  .|...|.|       .||..:.:
Mouse   354 -----------KDKDGRLVRTGSAELCAE-----ITGPDGVRLAVPVVDH-------KNGTYELV 395

  Fly   697 FSSVTSGVSGSSAVADAFASLSAVGGSV-------------------------VSGAGAGGSTVS 736
            :::.|.|        |...|:...|..|                         |...|..||.|.
Mouse   396 YTARTEG--------DLLLSVLLYGQPVRGSPFRVRALRPGDLPPSPDDVKRRVKSPGGPGSHVR 452

  Fly   737 SESLLDLTNKLLSATIYPPKSQIK----RQKMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVA 797
            .:::      ...:::|....:.|    ..::::  :.|..|..:|:||...||:..:...|:||
Mouse   453 QKAV------RRPSSMYSTGGKRKDNPIEDELVF--RVGSRGREKGEFTNLQGVSAASSGRIVVA 509

  Fly   798 DTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQF 862
            |:||..||:|..||:|||:||..|:...||..|..|||..| |||||.:.. ...:.|::..|:|
Mouse   510 DSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAVDTN-GDIIVADYD-NRWVSIFSPEGKF 572

  Fly   863 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFG----CSKHLEFPNGVVVN 923
            ..|.||..|..|:||.||..|.||||:.|...|..|..||.::.:||    ..:|...|:.|.||
Mouse   573 KTKIGAGRLMGPKGVAVDRNGHIIVVDNKSCCVFTFQPNGKLVGRFGGRGATDRHFAGPHFVAVN 637

  Fly   924 DKQEIFISDNRAHCVKVFNYEGQYLRQIG----GEGITNYPIGVGINSNGEILIADNHNNFNLTI 984
            :|.||.::|...|.|||::.:|::|.:.|    |.|..|.|.||.::|||.|::|| ..|..:.:
Mouse   638 NKNEIVVTDFHNHSVKVYSADGEFLFKFGSHGEGNGQFNAPTGVAVDSNGNIIVAD-WGNSRIQV 701

  Fly   985 FTQDGQLISALESKVK---HAQCFDVALMDDGSVVLASKDYRLY-IYRYVQ 1031
            |...|..:|.:.:..:   ..|  .:||..||.||:|......: .|||:|
Mouse   702 FDSSGSFLSYINTSAEPLYGPQ--GLALTSDGHVVVADAGNHCFKAYRYLQ 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871
Bbox2_BRAT-like 326..366 CDD:380856 14/46 (30%)
CC_brat-like 382..503 CDD:467844 31/131 (24%)
NHL_brat_like 760..1030 CDD:271329 103/285 (36%)
NHL repeat 783..819 CDD:271329 17/35 (49%)
NHL repeat 830..871 CDD:271329 16/40 (40%)
NHL repeat 874..910 CDD:271329 17/39 (44%)
NHL repeat 914..954 CDD:271329 15/43 (35%)
NHL repeat 959..997 CDD:271329 13/37 (35%)
NHL repeat 1002..1027 CDD:271329 8/25 (32%)
Trim3NP_001347354.1 NHL_TRIM2_like 477..750 CDD:271330 103/279 (37%)
NHL 1 479..522 16/44 (36%)
NHL repeat 495..534 CDD:271330 18/38 (47%)
NHL 2 526..569 18/44 (41%)
NHL repeat 542..581 CDD:271330 16/40 (40%)
NHL 3 570..611 19/40 (48%)
NHL repeat 584..621 CDD:271330 17/36 (47%)
NHL 4 615..658 15/42 (36%)
NHL repeat 628..669 CDD:271330 15/40 (38%)
NHL 5 662..705 16/43 (37%)
NHL repeat 675..717 CDD:271330 14/42 (33%)
NHL 6 706..749 12/44 (27%)
NHL repeat 720..746 CDD:271330 8/27 (30%)
RING-HC_TRIM3 16..63 CDD:438424 204/831 (25%)
Bbox_SF 107..159 CDD:469587 15/51 (29%)
BBC 164..290 CDD:128778 32/139 (23%)
Filamin 323..424 29/186 (16%)
IG_FLMN 328..425 CDD:214720 27/139 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 425..470 6/50 (12%)
Blue background indicates that the domain is not in the aligned region.

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