DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and trim45

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001011026.1 Gene:trim45 / 496435 XenbaseID:XB-GENE-997848 Length:547 Species:Xenopus tropicalis


Alignment Length:557 Identity:103/557 - (18%)
Similarity:170/557 - (30%) Gaps:178/557 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 SSSNTSANGSPPRCTACKSK-CSDAVAKCFECQSYLCANCVTAHE-FMHCFNGHNVCLIKGFEAS 228
            :.|...|.|. .:|..|:.. |...:..|...   ||..|:...| |.....||           
 Frog     4 NGSRKEAQGR-TQCPQCQQPFCQPRILPCLHT---LCGGCLAKLEPFSALGKGH----------- 53

  Fly   229 TTGTPLSVGSPSNN-----PASNEFK----YASSLTMMLQQQQQ------LDSQQQQQQQQLLPA 278
            :.||..||..|..:     ||....:    :.:...::|.|.|.      .|..::.|      |
 Frog    54 SAGTHWSVLCPVCDSEVALPAGGVEELLPDWLAEAEVLLAQVQSGGLALPCDLCREGQ------A 112

  Fly   279 QPMSQLSKI-VLAAAAQANSQEQQREDSIYGSLHPQQQQQQQQQQQRQLFCPRHKQELLKFSCRT 342
            :...|..|: |.....||:.::::   :....|||.|.............|..|..|.|...|..
 Frog   113 EKRCQECKVNVCEFCCQAHRRQKR---TAAHPLHPLQDLSLGTILPPAPCCTLHPLEALGLFCEP 174

  Fly   343 CCILVCKECIVLEHSTGLHELENVQSPGMTTSTGSTANESALQTL------LADMRGKIGEI--- 398
            |.:..|::|.:..|..  |:|.    |....:.|.  .||.|:.|      :..:...:|.:   
 Frog   175 CTVPCCRDCAIGHHRG--HDLR----PAAECAGGH--RESLLRALQEAEPHIEQLEAALGGVQEA 231

  Fly   399 --------VGIAGNSD---QNLTKVKLQYQKA-HNELNETHQFFASMLDERKTELLKELETLYTA 451
                    :|:....:   :...:..|:::.| ..::.|..|....:|..||.:|.::|..|.||
 Frog   232 GKALGQRALGLRAEVEAFIEGYVRAVLEHKAALLRDIEEETQRRQQVLALRKAQLQQQLLDLRTA 296

  Fly   452 K------------------------------------VNSNN-------SWQQRSR--------- 464
            .                                    .:.||       .|::...         
 Frog   297 SGFTRDLVARGPDLHLLQAQGLALTRLKELNQGAPRAADQNNPAGIQFSPWEEAGLCQGYQMQGV 361

  Fly   465 ---DLIDKGLATCEA--------VERSPA------------------PPSSLLTEALLLRKSLEQ 500
               ...|.|  .|||        .:..||                  |||     ..::.|..::
 Frog   362 LQVKAADPG--KCEARGAGLQSVCQGQPASFTFFCRTASGDPVLGGQPPS-----VTIVHKDTDR 419

  Fly   501 QLQTGIQEMQLPFEIEFMSNYQSIQAGVRNTFGYIRANSSDGGPTGMSLTSNGHGKQPPIARPTQ 565
            .|...||:.|   :..|..:|.:.:.|..:....:|...:.|.|..:.:..... :.|.|.....
 Frog   420 SLHPSIQDNQ---DGTFHISYLAPEPGELSISVSLRGQHTPGSPFSVKVRGKSQ-RHPGIYHCCT 480

  Fly   566 SASNSSASSA---------------GSGHHGHHQQSH 587
            ..|:.....|               |.||.||..|||
 Frog   481 FCSSGGQKEARCGCGGTMPGGYQGCGHGHKGHPGQSH 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871 11/45 (24%)
Bbox2_BRAT-like 326..366 CDD:380856 11/39 (28%)
CC_brat-like 382..503 CDD:467844 31/222 (14%)
NHL_brat_like 760..1030 CDD:271329
NHL repeat 783..819 CDD:271329
NHL repeat 830..871 CDD:271329
NHL repeat 874..910 CDD:271329
NHL repeat 914..954 CDD:271329
NHL repeat 959..997 CDD:271329
NHL repeat 1002..1027 CDD:271329
trim45NP_001011026.1 RING-HC_TRIM45_C-VII 14..69 CDD:438250 16/68 (24%)
Bbox1_TRIM45_C-X 102..145 CDD:380867 10/51 (20%)
Bbox_SF 160..>191 CDD:469587 9/32 (28%)
CC_brat-like 203..323 CDD:475168 18/121 (15%)
Filamin 366..461 CDD:395505 20/104 (19%)
Blue background indicates that the domain is not in the aligned region.

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