DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brat and trim2

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001005680.1 Gene:trim2 / 448181 XenbaseID:XB-GENE-942459 Length:760 Species:Xenopus tropicalis


Alignment Length:905 Identity:210/905 - (23%)
Similarity:346/905 - (38%) Gaps:219/905 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   179 CTACKSKCSDAVAKCFECQSYLCANC----VTAHEF-MHCFNGHNVCLIKGFEASTTGTP-LSVG 237
            |:.|..:..:  .|...|....|..|    :.||.. :.|    .||      ..|:..| ..|.
 Frog    23 CSICLDRYKN--PKVLPCLHTFCERCLQNYIPAHSLTLSC----PVC------RQTSILPEKGVS 75

  Fly   238 SPSNNPASNEFKYASSLTMMLQQQQQLDSQQQQQQQQLLPAQPMSQLSKIVLAAAAQANSQEQQR 302
            :..||      .:.::|..:||:......::             |.:.:.|.|.||         
 Frog    76 ALQNN------FFITNLMDVLQRSPDNGIEE-------------SSILETVSAVAA--------- 112

  Fly   303 EDSIYGSLHPQQQQQQQQQQQRQLFCPRHKQELLKFSCRTCCILVCKECIVLEHSTGLHELENVQ 367
                                .:.|.||.|...:::|.|::|...:|::|...||:         :
 Frog   113 --------------------GKPLSCPNHDGNVMEFYCQSCETAMCQDCTGGEHA---------E 148

  Fly   368 SPGMTTSTGSTANESALQTLLADMRGKIGEIVGIAGNSDQNLTKVKLQYQKAHNELNETHQFFAS 432
            .|.:........:::|||..|..::.::.||........:.:.::..|......|::.|......
 Frog   149 HPTVPLKDVVEQHKAALQAQLDAVKKRLPEIDSALQCVSEIVNQLASQKTSIVEEIHSTFDDLQK 213

  Fly   433 MLDERKTELLKELETLYTAKVNSNNSWQQRSRDLID--KGLATCEAVERSPAPPSSLLTEALLLR 495
            .|:.||:.||.|||..|..|   :...|.:...||:  :.:.:|... .:.|......||.||::
 Frog   214 TLNVRKSVLLMELEVNYGLK---HKVLQAQLDTLIEGQESIKSCTTF-TAQALNHGTETEVLLVK 274

  Fly   496 KSLEQQLQTGIQEMQLPF------EIEFMSNYQSIQAGVRNTFGYIRAN--SSDGGPTGMSLTSN 552
            |.:..:|.. :.|...|.      :::|:...:.::..:.|....:..|  :|:...||..|..:
 Frog   275 KQMSDKLNE-LAEQDFPLQPHENDQLDFIVETEGLKKSIHNLGTILTTNAVASETVATGEGLRQS 338

  Fly   553 GHGKQPPIARPTQSASNSSASSAGSGHHGHHQQSHHHGHHNHHQTAHHQQLQAQSSLHGLGLGLS 617
            ..| ||.....|....:......||.:                                    :|
 Frog   339 VIG-QPMSVTITTKDKDGELCKTGSAY------------------------------------IS 366

  Fly   618 GASLLDSSSSAGGAVGAFSNGGLLLGGRDRNALAVEQHFGELMPKRGGGGYTGSNGSATSAVAHY 682
            ........|...|.|....||              ...|...:|         :.|..|.::..|
 Frog   367 AELFTPDGSVTDGEVVDNKNG--------------TYEFSYTIP---------TEGDFTLSLRLY 408

  Fly   683 NPYEKWSNGGSDNLFSSVTSGVSGSSAVADAFASLSAVGGSVVSGAGAGGSTVSSESLLDLTNKL 747
            :.:.|    ||......|.|        ||...:...|...|.|   .|...|..:::      .
 Frog   409 DQHIK----GSPFKLKVVKS--------ADVSPTTEGVKRRVKS---PGSGHVKQKAV------K 452

  Fly   748 LSATIYPPKSQIKRQK------MIY----------HCKFGEFGVMEGQFTEPSGVAVNAQNDIIV 796
            ..|::|   |..||::      :|:          ....|..|..:|:||...|||.:....|::
 Frog   453 RPASMY---STGKRKENPIEDDLIFRVGSRKDEDVRSLTGTKGRNKGEFTNLQGVAASTNGKILI 514

  Fly   797 ADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ 861
            ||:||..:|||..:|:||.:||..|:...||..|..|| |..|||||:.:.. ...:.|::..|:
 Frog   515 ADSNNQCVQIFSNDGQFKSRFGIRGRSPGQLQRPTGVA-VHPSGDIIIADYD-NKWVSIFSADGK 577

  Fly   862 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKH--------LEFPN 918
            |..|.|:..|..|:||:||..|.||||:.|...|.||..||.::.:||...:        |:.|:
 Frog   578 FKTKIGSGKLMGPKGVSVDRNGHIIVVDNKACCVFIFQPNGKIVTRFGSRGNGDKQFAGTLDGPH 642

  Fly   919 GVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG----GEGITNYPIGVGINSNGEILIADNHNN 979
            ...||...||.::|...|.|||||.:|:::.:.|    |.|..|.|.||.::|||.|::|| ..|
 Frog   643 FAAVNSNNEIIVTDFHNHSVKVFNQDGEFILKFGSNGEGNGQFNAPTGVAVDSNGNIIVAD-WGN 706

  Fly   980 FNLTIFTQDGQLISALESKVKHAQCFD-------VALMDDGSVVLA-SKDYRLYIYRYVQ 1031
            ..:.:|...|..:|.:.:..      |       ::|..||.||:| |.::...:|||:|
 Frog   707 SRIQVFDGSGSFLSYINTSA------DPLYGPQGLSLTSDGHVVVADSGNHCFKVYRYLQ 760

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871 11/47 (23%)
Bbox2_BRAT-like 326..366 CDD:380856 11/39 (28%)
CC_brat-like 382..503 CDD:467844 29/122 (24%)
NHL_brat_like 760..1030 CDD:271329 101/305 (33%)
NHL repeat 783..819 CDD:271329 15/35 (43%)
NHL repeat 830..871 CDD:271329 14/40 (35%)
NHL repeat 874..910 CDD:271329 17/35 (49%)
NHL repeat 914..954 CDD:271329 15/43 (35%)
NHL repeat 959..997 CDD:271329 13/37 (35%)
NHL repeat 1002..1027 CDD:271329 8/32 (25%)
trim2NP_001005680.1 RAD18 2..>109 CDD:227719 21/116 (18%)
RING-HC_TRIM2 15..65 CDD:438423 11/53 (21%)
Bbox2_TRIM2_C-VII 115..156 CDD:380882 12/49 (24%)
CC_brat-like 161..282 CDD:467844 29/124 (23%)
IG_FLMN 325..421 CDD:214720 24/159 (15%)
NHL_TRIM2_like 483..760 CDD:271330 99/285 (35%)
NHL repeat 501..540 CDD:271330 16/38 (42%)
NHL repeat 548..587 CDD:271330 14/40 (35%)
NHL repeat 590..627 CDD:271330 18/36 (50%)
NHL repeat 634..679 CDD:271330 15/44 (34%)
NHL repeat 685..727 CDD:271330 14/48 (29%)
NHL repeat 730..756 CDD:271330 7/25 (28%)

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