DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brat and wech

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_524772.2 Gene:wech / 44653 FlyBaseID:FBgn0259745 Length:832 Species:Drosophila melanogaster


Alignment Length:1056 Identity:231/1056 - (21%)
Similarity:378/1056 - (35%) Gaps:344/1056 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 SASVSSSSSASSSSCSSSSSSSSSSSSSSSSTSGLSGC----GSTSSSVISANNVASSNGPGV-- 132
            |.:.|:::.|.||:.:.|...|.||::|:||...|:|.    .:...:|....||..|:.|..  
  Fly    17 SNAPSANNVAHSSTANGSGGGSVSSNASNSSERLLAGILESFPAWDLNVGLLPNVGQSSPPRADF 81

  Fly   133 -IGSNLQSSNNGGNSGISSLVVGAGKGSNSSSNSSSSNTSANGSPPRCTACKSKCSDAVAKCFEC 196
             |.:.|...:..|:..|..:      ||.:.||...|..|:|.|...|..|:...|   .:|.||
  Fly    82 FINNFLGGLDTHGDFSIGPI------GSGARSNPKMSPESSNNSSISCGWCEVSAS---IRCLEC 137

  Fly   197 QSYLCANCVTAHEFMHCFNGHN-VCLIKGFEASTTGTPLSVGSPSN--NPASNEFKYASSLTMML 258
            ..::|.:|:..|......:.|: |.|.....||.||     ||..|  .|.|..|          
  Fly   138 NEFMCNDCLREHRNSPLSSNHSIVSLPTPIGASPTG-----GSSVNAQTPPSGNF---------- 187

  Fly   259 QQQQQLDSQQQQQQQQLLPAQPMSQLSKIVLAAAAQANSQEQQREDSIYGSLHPQQQQQQQQQQQ 323
                                                                             
  Fly   188 ----------------------------------------------------------------- 187

  Fly   324 RQLFCPRHKQELLKFSCRTCCILVCKECIVLEHSTGLHELENVQS---------PGMTTST--GS 377
               .|..| .|:|::.|..|..|||:.|.:.||..  |...::||         .|...|:  |:
  Fly   188 ---ICDIH-NEMLRYVCDYCRKLVCQCCTLHEHKE--HSYASIQSFMVGSKEKLEGAIESSQVGT 246

  Fly   378 TANESALQTLLADMRGKIGEIVGIAGNSDQNLTKVKLQYQKAHNELNETHQFFASMLDERKTELL 442
            ...:|::...||.:|     ::      ::|.:::....:||..:       |...:::|:..||
  Fly   247 RCIKSSIDKALAFIR-----LI------ERNCSELSDNIRKAFRQ-------FIIAIEDRERFLL 293

  Fly   443 KELETLYTAKVNSNNSWQQRSRDLIDKGLATCEAVERSPAPPSSLLTEALLLRKSLEQ-----QL 502
            ..:|.|           :||...::...:|..::.....:..|.:|::......:::|     :|
  Fly   294 DFVEKL-----------RQRRLAILHDQMAGLKSALAGLSETSDMLSKVADNACNMDQIEIAMKL 347

  Fly   503 QTGIQEMQLPFEIEFMSNYQSIQ----------------AGVRNTFGYIRANSSDGGPTGMSLTS 551
            ..|.::|:     :|...|:.:|                ..:||..|.|..:..:     :.:.|
  Fly   348 TNGQRQME-----QFAGIYKDLQPKQEVFAFAPPDYSLLQDIRNQGGVILVDDKN-----LPIVS 402

  Fly   552 NGHGKQPPIARPTQSASNSSASSAGSGHHGHHQQSHHHGHHNHHQTAHHQQLQAQSSLHGLGLGL 616
            :.:|..|       |.|:.:|.:|.|                                    :|:
  Fly   403 SSNGIVP-------SVSSVNAVAAAS------------------------------------VGV 424

  Fly   617 SGASLLDSSSSAGGAVG--AFSNGGLLLGGRD--RNALAV-----------EQHF---GELMPKR 663
            .|        ...|.||  ..|||..|..|.:  .|.|:|           :..|   ..:|..|
  Fly   425 VG--------GVAGVVGGVGVSNGLDLAFGMNMPNNPLSVASSSVRRPLLRDNSFRIPSPIMQPR 481

  Fly   664 GGGGYTGSNGSATSAVAHYNPYEKWSNGG---SDNL-FSS--VTSGVSG---------SSAVADA 713
            ||.....|:|.:::|:       .|...|   |..| ||:  .|..:.|         |:|::.:
  Fly   482 GGSACGMSSGMSSAAL-------DWELNGLRSSPGLHFSAPRTTQAIPGCMDLVKVRNSNALSLS 539

  Fly   714 FASLSAVGGSVVSGAGAGGSTVSSESLLDLTNKLLSATIYPPKSQIKRQKMIYHCKFGEFGVMEG 778
            ||:.....|.|....|.....:....:.|..|..:.  ::.|...:|       .|||..||..|
  Fly   540 FATEGHEDGQVSRPWGLCVDKMGHVLVSDRRNNRVQ--VFNPDGSLK-------FKFGRKGVGNG 595

  Fly   779 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDII 843
            :|..|:|:.|:..|.|||.|.:|||:|||...|.|..:||..||...|..||..|||  ||...|
  Fly   596 EFDLPAGICVDVDNRIIVVDKDNHRVQIFTASGVFLLKFGSYGKEYGQFQYPWDVAV--NSRRQI 658

  Fly   844 VTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF 908
            |...|..|:||.::..|:|:|:                              |:||.:|.     
  Fly   659 VVTDSRNHRIQQFDSEGRFIRQ------------------------------IVFDNHGQ----- 688

  Fly   909 GCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGI----TNYPIGVGINSN 968
              :|.:..|.||.......|.:||...||:.:.:.: ...|...|.||.    .|.|.|:..:..
  Fly   689 --TKGIASPRGVCYTPTGNIIVSDFDNHCLYLIDPDINDILSVKGHEGSGFHEFNRPSGLCCDDE 751

  Fly   969 GEILIADNHNNFNLTIFTQDGQLISALESK------------VKHAQCFDVALMDDGSVVL---- 1017
            |.|::||:.|. .:.:|.|:...:..:|.:            .|...| |||:|.||.:|.    
  Fly   752 GRIIVADSKNQ-RILVFNQNLDFMWDIEVRPSINPLMPPTLDEKDRTC-DVAIMPDGRIVFLIEL 814

  Fly  1018 ------ASKDYRLYIY 1027
                  .|..|:.:::
  Fly   815 SPDSKEGSNPYKRFVH 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871 11/44 (25%)
Bbox2_BRAT-like 326..366 CDD:380856 13/39 (33%)
CC_brat-like 382..503 CDD:467844 19/125 (15%)
NHL_brat_like 760..1030 CDD:271329 84/295 (28%)
NHL repeat 783..819 CDD:271329 17/35 (49%)
NHL repeat 830..871 CDD:271329 15/40 (38%)
NHL repeat 874..910 CDD:271329 4/35 (11%)
NHL repeat 914..954 CDD:271329 10/40 (25%)
NHL repeat 959..997 CDD:271329 9/37 (24%)
NHL repeat 1002..1027 CDD:271329 10/34 (29%)
wechNP_524772.2 Bbox1 123..163 CDD:380815 11/42 (26%)
Bbox2_TRIM66-like 187..228 CDD:380852 16/121 (13%)
CC_brat-like 232..343 CDD:475168 22/139 (16%)
NHL_TRIM71_like 528..810 CDD:271324 91/331 (27%)
NHL repeat 553..592 CDD:271324 8/47 (17%)
NHL repeat 600..639 CDD:271324 18/38 (47%)
WD40 repeat 603..640 CDD:293791 17/36 (47%)
WD40 repeat 647..684 CDD:293791 16/68 (24%)
NHL repeat 647..683 CDD:271324 16/67 (24%)
WD40 repeat 692..736 CDD:293791 12/43 (28%)
NHL repeat 692..733 CDD:271324 10/40 (25%)
NHL repeat 742..772 CDD:271324 9/30 (30%)
WD40 repeat 743..767 CDD:293791 7/24 (29%)

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