DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brat and tn

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001137707.1 Gene:tn / 37190 FlyBaseID:FBgn0265356 Length:1517 Species:Drosophila melanogaster


Alignment Length:1053 Identity:227/1053 - (21%)
Similarity:391/1053 - (37%) Gaps:334/1053 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 DEYTGGSSVKSRSEVTVINGHHPISASVS-------SSSSASSSSCSSSSSSSSSSSSSSSSTSG 107
            :||| ...::|:.         |:||.|:       |.||.||:|..||:||:::::.:::|||.
  Fly   724 EEYT-EEEIESKP---------PVSAQVAAVKKTQRSGSSDSSASTESSASSAAAAAVAATSTSA 778

  Fly   108 LSGCGSTSSSVISANNVASSNGPGVIGSNLQSSNN---------------GGNSGISSLVVGAGK 157
            .:...:||||     |..|.|......|...::.:               ..:|..|:....|.|
  Fly   779 TAAAPATSSS-----NSTSQNAKAPSSSRYSTARDTTAVPEKKPFVSRFLPQHSTASTTNGSADK 838

  Fly   158 GSNSSSNSSSSNTSANGSPPRCTACKSKCSDAVAKCFECQSYLCANCVTAHEFMHCFNGHNVCLI 222
            ....||:||...||:..........|:|.|..                                 
  Fly   839 KKAESSSSSEEETSSESESESEPETKAKSSAT--------------------------------- 870

  Fly   223 KGFEASTTGTPLSVGSPSNNPASNEFKYASSLTMMLQQQQQLDSQQQQQQQQLLPAQPMSQLSKI 287
                :|||.|     ..:.|.|::....|||.|.....:.:|::::..:...             
  Fly   871 ----SSTTNT-----KSTPNSAASSTTAASSSTTSGSYRDRLEARRASRDDS------------- 913

  Fly   288 VLAAAAQANSQEQQREDSIYGSLHPQQQQQQQQQQQRQLFCPRHKQELL-KFSCRTCCILVCKEC 351
              ::.|...|.......|.|||     .......:.|.:..|.|..|.. ::...|.....    
  Fly   914 --SSTAAGRSSYATPSSSGYGS-----GSGTTGGRTRAVPAPHHTSESEDRYGSGTGSSYT---- 967

  Fly   352 IVLEHSTGLHELEN---VQSPGMTTSTGSTANESALQTLLADMRGKIGEIVGIAGNSDQNLTKVK 413
                 |..|::.::   |..|.::|.|.|...::                .|...:||......:
  Fly   968 -----SRFLNKSKSSAIVTQPSLSTPTASFDEDA----------------TGTGDDSDSRYGTGR 1011

  Fly   414 LQYQKAHNELNETHQFFASMLDERKTELLKELETLYTAKVNSNNSWQQRSRDLIDKGLATCEAVE 478
            .:|               ..:.||:|.|         |:..|::.:.....||.:          
  Fly  1012 SRY---------------LAMKERRTRL---------ARSRSSHQFGNDDEDLDE---------- 1042

  Fly   479 RSPAPPSSLLTEALLLRKSLEQQLQTGIQEMQLPFEIEFMSNYQSIQAGVRNTFGYIRANSSDGG 543
              |..|:::...|.|..:....                                ||        |
  Fly  1043 --PVSPTTVSPSAYLASRCAYS--------------------------------GY--------G 1065

  Fly   544 PTGMSLTSNGHGKQPPIARPTQSASNSSASSAGSGHHGHHQQSHHHGHHNHHQTAHHQQLQAQSS 608
            .:.:|.:.:.|.        .:|..||..:..|:|                         .::||
  Fly  1066 SSDLSRSRSSHA--------LKSRDNSPITDRGAG-------------------------SSRSS 1097

  Fly   609 LHGLGLGLSGASLLDSSSSAGGAVGAFS--------------NGGLLLGGRDRNALAVEQHFGEL 659
                  ||.|:|..||..  |.|:.:::              :.|.....||.:|          
  Fly  1098 ------GLGGSSTTDSKD--GEALSSWARYLKNKYGNKSSKDSAGSSGSARDTHA---------- 1144

  Fly   660 MPKRGGGGYTGSNGSATSAVAHYNPYEKWSNGGSDNLFSSVTSGVSGSSAVADAFASLS------ 718
                  |..|.|:.:|:|:.||.              :.|.|||.||.|..:|....||      
  Fly  1145 ------GSSTSSSAAASSSHAHG--------------YGSGTSGSSGRSTASDVSRRLSLGLPLR 1189

  Fly   719 ---AVGGSVVSGA--GAGGST----VSSESLLDLTNKLLSATIYPPKSQIKRQKMIYHCKFGEFG 774
               .:..|...|:  |.|..|    .::.:...:|.   :|...|.:..:::::.::  :.|..|
  Fly  1190 QANELASSDDDGSKNGLGSPTSPTVAAAVAAAGITG---AAGTIPKQVYLRKRQQLF--QLGGRG 1249

  Fly   775 VMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNS 839
            ...|.||.|.|:||...|.|:|||::|||:|:||..|.|..:|||.|..:.:......|||.| .
  Fly  1250 SEPGSFTWPRGLAVGPDNSIVVADSSNHRVQVFDSNGIFVKEFGEYGNGEGEFDCLAGVAVNR-I 1313

  Fly   840 GDIIVTERSPTHQIQIYNQYGQFVRKFGAT-----ILQHPRGVTVDNKGRIIVVECKVMRVIIFD 899
            |..|:.:|. .|:||:.:..|:|:|.||:.     ...:|.|||.|..|.|.|.:.:..||.:|.
  Fly  1314 GQYIIADRY-NHRIQVLDPQGRFLRAFGSQGTADGKFNYPWGVTTDALGFIYVCDKENHRVQVFQ 1377

  Fly   900 QNGNVLHKFG-CSK---HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITN-- 958
            .:|:.:.||| |.:   .||.|:.:.|::...:.:||:..|.:::|:..|:.|..:||||..:  
  Fly  1378 SDGSFVGKFGSCGRGEGQLEHPHYIAVSNTNRVIVSDSNNHRIQIFDVNGKVLSTVGGEGSDDGQ 1442

  Fly   959 --YPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL------ESKVKHAQCFDVALMDDGSV 1015
              :|.||.::..|.|.:||:.|| .:.||..||..:...      :|:.|..:  .||:|.:|::
  Fly  1443 FKFPRGVAVDDQGYIFVADSGNN-RIQIFNPDGSFLKTFGSWGSGDSEFKGLE--GVAIMSNGNI 1504

  Fly  1016 VLASKD-YRLYIY 1027
            ::..:: :|:.::
  Fly  1505 LVCDRENHRVQVF 1517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871 3/43 (7%)
Bbox2_BRAT-like 326..366 CDD:380856 6/43 (14%)
CC_brat-like 382..503 CDD:467844 16/120 (13%)
NHL_brat_like 760..1030 CDD:271329 91/288 (32%)
NHL repeat 783..819 CDD:271329 18/35 (51%)
NHL repeat 830..871 CDD:271329 15/45 (33%)
NHL repeat 874..910 CDD:271329 15/36 (42%)
NHL repeat 914..954 CDD:271329 11/39 (28%)
NHL repeat 959..997 CDD:271329 13/43 (30%)
NHL repeat 1002..1027 CDD:271329 5/25 (20%)
tnNP_001137707.1 RING-HC_NHL-1-like 3..55 CDD:438187
CC_brat-like 124..232 CDD:475168
NHL_TRIM71_like 1234..1517 CDD:271324 91/289 (31%)
NHL repeat 1258..1297 CDD:271324 20/38 (53%)
WD40 repeat 1261..1304 CDD:293791 19/42 (45%)
NHL repeat 1305..1344 CDD:271324 15/40 (38%)
WD40 repeat 1345..1377 CDD:293791 10/31 (32%)
NHL repeat 1352..1388 CDD:271324 14/35 (40%)
NHL repeat 1396..1436 CDD:271324 11/39 (28%)
WD40 repeat 1402..1439 CDD:293791 11/36 (31%)
NHL repeat 1445..1475 CDD:271324 12/30 (40%)
WD40 repeat 1446..1485 CDD:293791 13/39 (33%)
NHL repeat 1491..1517 CDD:271324 6/27 (22%)
Blue background indicates that the domain is not in the aligned region.

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