DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and Nhlrc1

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_954706.1 Gene:Nhlrc1 / 364682 RGDID:735081 Length:396 Species:Rattus norvegicus


Alignment Length:330 Identity:75/330 - (22%)
Similarity:129/330 - (39%) Gaps:69/330 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   746 KLLSATIYPPKSQIKRQK------MIYHCKFGEFGVMEGQFTEPSGVAVNAQND-IIVADTNNHR 803
            :||.:|::...:.:....      ..||. ||.:|.:    ..|:|:|:..:.. ::|......|
  Rat    88 ELLGSTLHASPAALSAASCAPGALTCYHA-FGGWGTL----VNPTGLALCPKTGRVVVVHDGKRR 147

  Fly   804 IQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-------- 860
            ::|||..|....||||.|.....:.||..|||. |...::||:.... .:::::.:|        
  Rat   148 VKIFDSGGGGAHQFGEKGDAAHDVKYPLDVAVT-NDCHVVVTDAGDC-SLKVFDFFGQIKLVVGK 210

  Fly   861 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF-GCSKHLEFPNGV---- 920
            ||...:|..|..| .||.|.:      .|...:.::..|....||.:. ....||..|.||    
  Rat   211 QFSLPWGVEITPH-NGVLVTD------AEAGTLHLLEADFPEGVLRRIERLQAHLCNPRGVAVSW 268

  Fly   921 ------VVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGIT-NYP-----IGVGINSNGEILI 973
                  |:.....:..|......|||||...|.:.|:...|:. .:|     ..|..:..|.:::
  Rat   269 LTGAIAVLEHPCALGTSSGNNTRVKVFNSSMQLIGQVDSFGLNLLFPSKITASAVTFDHQGNVIV 333

  Fly   974 ADNHNNFNLTIFTQDGQLI---------SALESKVKHAQCFDVALM---DDGSVVLASKDYRLYI 1026
            ||.           .|..|         .||:..|.|.....|||:   ::..:||.|..:.:.:
  Rat   334 ADT-----------SGPAIVCLGKPEEFPALKPMVTHGLSRPVALVFTKENSLLVLDSASHSIKV 387

  Fly  1027 YRYVQ 1031
            ::.::
  Rat   388 FKVME 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871
Bbox2_BRAT-like 326..366 CDD:380856
CC_brat-like 382..503 CDD:467844
NHL_brat_like 760..1030 CDD:271329 72/313 (23%)
NHL repeat 783..819 CDD:271329 11/36 (31%)
NHL repeat 830..871 CDD:271329 11/48 (23%)
NHL repeat 874..910 CDD:271329 7/36 (19%)
NHL repeat 914..954 CDD:271329 13/49 (27%)
NHL repeat 959..997 CDD:271329 9/51 (18%)
NHL repeat 1002..1027 CDD:271329 6/27 (22%)
Nhlrc1NP_954706.1 RING-HC_malin 21..72 CDD:438179
NHL 1 110..154 13/48 (27%)
NHL_TRIM32_like 115..389 CDD:271331 71/298 (24%)
NHL repeat 126..166 CDD:271331 13/39 (33%)
NHL 2 158..201 13/44 (30%)
NHL repeat 174..213 CDD:271331 9/40 (23%)
NHL 3 202..242 10/46 (22%)
NHL repeat 215..256 CDD:271331 10/47 (21%)
NHL 4 245..298 14/52 (27%)
NHL repeat 258..311 CDD:271331 14/52 (27%)
NHL 5 299..347 10/58 (17%)
NHL repeat 319..351 CDD:271331 6/42 (14%)
NHL 6 348..391 10/42 (24%)
NHL repeat 362..388 CDD:271331 6/25 (24%)
Blue background indicates that the domain is not in the aligned region.

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