DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and Nhlrc1

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_780549.1 Gene:Nhlrc1 / 105193 MGIID:2145264 Length:401 Species:Mus musculus


Alignment Length:331 Identity:77/331 - (23%)
Similarity:130/331 - (39%) Gaps:68/331 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   739 SLLDLTNKLLSATIYPPKSQIKRQKMIYHCKFGEFGVMEGQFTEPSGVAVNAQND-IIVADTNNH 802
            |.|..:...|||..:.|.:     ...||. ||.:|.:    ..|:|:|:..:.. ::|......
Mouse    97 STLHASPAALSAAPFAPGT-----LTCYHA-FGGWGTL----VNPTGLALCPKTGRVVVVHDGKR 151

  Fly   803 RIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG------- 860
            |::|||..|....||||.|.....:.||..|||. |...::||:.... .:::::.:|       
Mouse   152 RVKIFDSGGGGAHQFGEKGDAAHDVKYPLDVAVT-NDCHVVVTDAGDC-SLKVFDFFGQIKLVVG 214

  Fly   861 -QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF-GCSKHLEFPNGVVVN 923
             ||...:|..|..| .||.|.:      .|...:.::..|....||.:. ....||..|.|:.|:
Mouse   215 KQFSLPWGVEITPH-NGVLVTD------AEAGTLHLLEADFPEGVLRRIERLQAHLCSPRGLAVS 272

  Fly   924 ------DKQEIFISDNRAHC----VKVFNYEGQYLRQIGGEGIT-NYP-----IGVGINSNGEIL 972
                  ...|...:..|..|    |||||...|.:.|:...|:. .:|     ..|..:..|.::
Mouse   273 WLTGAIAVLEHPCAFGRTGCNNTRVKVFNSTMQLIGQVDSFGLNLLFPSKVTASAVTFDHQGNVI 337

  Fly   973 IADNHNNFNLTIFTQDGQLI---------SALESKVKHAQCFDVAL---MDDGSVVLASKDYRLY 1025
            :||.           .|..|         .||:..:.|.....|||   .::..:||.:..:.:.
Mouse   338 VADT-----------SGPAIVCLGKPEEFPALKPIITHGLSRPVALAFTKENSLLVLDTASHSIK 391

  Fly  1026 IYRYVQ 1031
            :::.::
Mouse   392 VFKVME 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871
Bbox2_BRAT-like 326..366 CDD:380856
CC_brat-like 382..503 CDD:467844
NHL_brat_like 760..1030 CDD:271329 71/307 (23%)
NHL repeat 783..819 CDD:271329 11/36 (31%)
NHL repeat 830..871 CDD:271329 11/48 (23%)
NHL repeat 874..910 CDD:271329 7/36 (19%)
NHL repeat 914..954 CDD:271329 14/49 (29%)
NHL repeat 959..997 CDD:271329 9/51 (18%)
NHL repeat 1002..1027 CDD:271329 5/27 (19%)
Nhlrc1NP_780549.1 RING-HC_malin 26..77 CDD:438179
NHL 1 115..159 13/53 (25%)
NHL_TRIM32_like 120..394 CDD:271331 70/298 (23%)
NHL repeat 131..171 CDD:271331 13/39 (33%)
NHL 2 163..206 13/44 (30%)
NHL repeat 179..218 CDD:271331 9/40 (23%)
NHL 3 207..247 10/46 (22%)
NHL repeat 220..261 CDD:271331 10/47 (21%)
NHL 4 250..303 15/52 (29%)
NHL repeat 263..316 CDD:271331 15/52 (29%)
NHL 5 304..352 10/58 (17%)
NHL repeat 324..356 CDD:271331 6/42 (14%)
NHL 6 353..396 8/42 (19%)
NHL repeat 367..393 CDD:271331 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.

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