DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment brat and trim3

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:XP_031753313.1 Gene:trim3 / 100497041 XenbaseID:XB-GENE-5826034 Length:790 Species:Xenopus tropicalis


Alignment Length:816 Identity:201/816 - (24%)
Similarity:334/816 - (40%) Gaps:187/816 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 QQQQLLPAQPMSQLSK----IVLAAAAQANSQEQQREDSIYGSLHPQQQQQQQQQQQRQLFCPRH 331
            :|..:||.:.:|.|..    ..|....|.:.:..::|.|:..|        :.|:....|.||.|
 Frog   107 RQTSILPEKGVSALQNNFFITNLMEVLQRSPESGRQEQSVLPS--------EGQEAGTPLSCPNH 163

  Fly   332 KQELLKFSCRTCCILVCKEC---------------IVLEHSTGL-HELENVQS--PGMTTSTGST 378
            :.:.:::.|..|...:|.||               :|.:|...| ::||:::|  |.:|      
 Frog   164 QGKTMEYYCGPCETAMCVECTEGEHREHCTVPLRDVVEQHKASLRNQLESIRSRIPQLT------ 222

  Fly   379 ANESALQTLLADMRGKIGEIVGIAGNSDQNLTKVKLQYQKAHNELNETHQFFASMLDERKTELLK 443
               ||:. |::|:..::.|                 :...|.||:....:.....|.:||:.||:
 Frog   223 ---SAID-LVSDISRQLSE-----------------RKNSAVNEICSAFEELEKALQQRKSALLQ 266

  Fly   444 ELETLYTAKVNSNNSWQQRSRDLIDKGLATCEAVERSPAPPSSLLTEALLLRKSLEQQLQT---- 504
            :||.:...|.....|.....|..:|...::....|::....|.  ||.||:||.:.::|..    
 Frog   267 DLEAICVGKQKVLQSQLSSLRQGLDNMESSVRFTEQALGHGSE--TEVLLVRKQMSERLNELAAR 329

  Fly   505 --GIQEMQLPFEIEFMSNYQSIQAGVRNTFGYIRAN--SSDGGPTGMSLTSNGHGKQPPIARPTQ 565
              .:...|.| ::||....:.::..::|....:..|  :.....||..|.....|:|..:...|:
 Frog   330 DFPLHPQQNP-QLEFRVETEGLRRSLQNLGALLTTNAVAYASVATGEGLRQALVGQQTSVTVTTK 393

  Fly   566 S-------ASNSSASSAGSGHHGHHQQSHHHGHHNHHQTAHHQQLQAQSSLHGLGLGLSGASLLD 623
            .       :.|::..:..:|..|..|:    |....::...::.|..        |.:.|..|| 
 Frog   394 DMDGELVRSGNATLKAQITGPDGGAQE----GEVTDNKNGTYEVLYT--------LRVEGEHLL- 445

  Fly   624 SSSSAGGAVGAFSNGGLLLGGRDRNALAVEQHFGELMPKRGGGGYTGSNGSATSAVAHYNPYEKW 688
                           .|.|.|:               |.||                  :||.  
 Frog   446 ---------------SLRLYGQ---------------PLRG------------------SPYR-- 460

  Fly   689 SNGGSDNLFSSVTSGVSGSSAVADAFASLSAVGGSVVSGAGA--GGSTVSSESLLDLTNKLLSAT 751
                    ..::..|        |...|...|...|.|.:|.  ....|...|.:..|||     
 Frog   461 --------VRAIKPG--------DVPPSPEDVKRRVKSPSGGHIRQKAVRRPSSMYSTNK----- 504

  Fly   752 IYPPKSQIKRQKMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQ 816
               .|......:||  .:.|..|..:|:|:...|::.:..|.|:|||:||..||:|..:|:||.:
 Frog   505 ---KKENPIEDEMI--LRVGSRGRDKGEFSNLQGISASCNNRIVVADSNNQCIQVFTNDGQFKLR 564

  Fly   817 FGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDN 881
            ||..|:...||..|..|||..| |||||.:.. ...:.|::..|:|..|.|...|..|:||.||.
 Frog   565 FGVRGRSPGQLQRPTGVAVDMN-GDIIVADYD-NRWVSIFSPEGKFKNKIGVGRLMGPKGVAVDR 627

  Fly   882 KGRIIVVECKVMRVIIFDQNGNVLHKFGC----SKH----LEFPNGVVVNDKQEIFISDNRAHCV 938
            .|.:|||:.|...:.||..||.::.:||.    .|.    |:.|:.|.||:|.||.::|...|.|
 Frog   628 NGHLIVVDNKSCCIFIFQSNGKLVGRFGARGPGDKQQPGALDGPHFVAVNNKNEIVVTDFHNHSV 692

  Fly   939 KVFNYEGQYLRQIG----GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALES-- 997
            ||::.:|::|.:.|    |.|..|.|.||.::|||.|::|| ..|..:.:|...|..:|.:.:  
 Frog   693 KVYSADGEFLYKFGSHGEGNGQFNAPTGVAVDSNGNIIVAD-WGNSRIQVFDSSGSFLSYINTMG 756

  Fly   998 -KVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 1031
             .:...|  .:||..:|.||:| |.::...:|||:|
 Frog   757 DPLYGPQ--GLALTSEGHVVVADSGNHCFKVYRYLQ 790

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871
Bbox2_BRAT-like 326..366 CDD:380856 14/55 (25%)
CC_brat-like 382..503 CDD:467844 27/120 (23%)
NHL_brat_like 760..1030 CDD:271329 100/285 (35%)
NHL repeat 783..819 CDD:271329 15/35 (43%)
NHL repeat 830..871 CDD:271329 15/40 (38%)
NHL repeat 874..910 CDD:271329 15/35 (43%)
NHL repeat 914..954 CDD:271329 16/43 (37%)
NHL repeat 959..997 CDD:271329 13/37 (35%)
NHL repeat 1002..1027 CDD:271329 8/25 (32%)
trim3XP_031753313.1 RAD18 54..>150 CDD:227719 10/50 (20%)
RING_Ubox 60..107 CDD:473075 201/816 (25%)
Bbox2_TRIM3_C-VII 154..198 CDD:380883 9/43 (21%)
CC_brat-like 203..324 CDD:467844 34/149 (23%)
IG_FLMN 369..463 CDD:214720 24/164 (15%)
NHL_TRIM2_like 513..790 CDD:271330 101/283 (36%)
NHL repeat 531..570 CDD:271330 16/38 (42%)
NHL repeat 578..617 CDD:271330 15/40 (38%)
NHL repeat 620..657 CDD:271330 16/36 (44%)
NHL repeat 668..709 CDD:271330 16/40 (40%)
NHL repeat 715..757 CDD:271330 14/42 (33%)
NHL repeat 760..786 CDD:271330 8/27 (30%)
Blue background indicates that the domain is not in the aligned region.

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