DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and trim71

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:XP_004915429.1 Gene:trim71 / 100486898 XenbaseID:XB-GENE-6035039 Length:853 Species:Xenopus tropicalis


Alignment Length:1069 Identity:239/1069 - (22%)
Similarity:394/1069 - (36%) Gaps:349/1069 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 SSPPASDSAICSDEYTGGSSVKSRSEVTVINGHHPISASVSSSSSASSSSCSSSSSSSSSSSSSS 102
            :|.|.||..:|                       |:...:..||:..|||.||||||..|:||||
 Frog     2 ASFPESDFQLC-----------------------PLCKEMCVSSAPISSSSSSSSSSQVSTSSSS 43

  Fly   103 SSTSGLSGCGSTSS-----------SVISANNVASSNGPG-------------VIGSN-----LQ 138
            :.::| .|.|..|:           .......:.....||             |:.|.     |.
 Frog    44 AGSAG-GGTGLASAPPRRLHVLPCLHAFCRQCLEGRRSPGDSLQLRCPVCDHKVLISEAGMDALP 107

  Fly   139 SSNNGGNSGISSLVVGAGK-------GSNSSSNSSSSNTSANG---------SPPRCTACKSKCS 187
            ||.....|.:...||||..       |..:|:...|::.|::|         |.|||::|... :
 Frog   108 SSTFLHLSNLLDAVVGAADEQQQSNGGRTASNRQRSASCSSSGLLRRAPPSQSEPRCSSCDDG-N 171

  Fly   188 DAVAKCFECQSYLCANCVTAHEFMHCFNGHNVCLIKGFEASTTGTPLSVGSPSNNPASNEFKYAS 252
            .|.:.|.:||..||.||:.||:.:.....|   .|:.|.||...:..|..:.:::.:|:.|    
 Frog   172 GASSHCLDCQENLCDNCLRAHQRVRLTKDH---FIERFPASPCSSAASSAATTSSSSSSAF---- 229

  Fly   253 SLTMMLQQQQQLDSQQQQQQQQLLPAQPMSQLSKIVLAAAAQANSQEQQREDSIYGSLHPQQQQQ 317
                                 .|||..|                                     
 Frog   230 ---------------------SLLPVYP------------------------------------- 236

  Fly   318 QQQQQQRQLFCPRHKQELLKFS----------------------CRTCCILVCKECIVLEHSTGL 360
                  .:|:|.:|.:|:.||.                      |.:|.:.:|:||.:..|:.  
 Frog   237 ------ERLYCQQHDEEIYKFGIRKRVYTLADLVRIKDWVLHFYCDSCSVPICRECTMGRHAG-- 293

  Fly   361 HELENVQSPGMTTSTGSTANESALQ-------TLLAD-MRGKIGEIVGIAGNSDQNLT-KVKLQY 416
            |....:|              .|||       .|||| .:|:  :.:.::....|.|. :|:::.
 Frog   294 HSFVYLQ--------------EALQDSRALTIQLLADAQQGR--QAIQLSLEQAQALAEQVEMKA 342

  Fly   417 QKAHNELNETHQFFASMLDERKTELLKELETLYTAKVNSNNSWQQRSRDLIDKGLATCEAVERSP 481
            :...:|:..........|:||:.|||.::|.:...|..|.....::....::|..:|..||::  
 Frog   343 KVVQSEIKAVTSRHKKALEERECELLWKVEKIRQVKAKSLYHQVEKLHQALNKLDSTINAVQQ-- 405

  Fly   482 APPSSLLTEA-----LLLRKSLEQQLQ-----TGIQEMQLPFEIEFMSNYQSIQAGVRNTFGYIR 536
                 :|.|.     |:.|..:..|:|     .|:.::|....|.|....|::...:: :.|.: 
 Frog   406 -----VLEEGCTMDILIARDRVLAQVQDVKNARGLLQLQEDDRIMFTPPDQALYLAIK-SLGLV- 463

  Fly   537 ANSSDGGPTGMSLTSNGHGKQPPIARPTQSASNSSASSAGSGHHGHHQQSHHHGHHNHHQTAHHQ 601
               |.|....:: .:.|.|    :.|..| ...:|.:..|..|.|..:                 
 Frog   464 ---SSGAFAALT-KATGEG----LKRALQ-GKVASFTVIGYDHDGEAR----------------- 502

  Fly   602 QLQAQSSLHGLGLGLSGASLLDSSSSAGGAVGAFSNGGLLLGGRDRNALAVEQHFGELMPKRGGG 666
                          |||..|:.                :|:.|.|.|..|.|      :..:..|
 Frog   503 --------------LSGGDLIT----------------VLVMGPDGNLFAAE------VSDQLNG 531

  Fly   667 GYTGSNGSATSAVAHYNPYEKWSNGGSDNLFS---------------SVTSGVSGSSAVADAFAS 716
            .|          :..|.|..:     .::|.|               :|.||           ..
 Frog   532 TY----------LVSYRPQLE-----GEHLISVMVCNQHIENSPFKVNVKSG-----------RC 570

  Fly   717 LSAVGGSVVSGAGAG----------GSTVSSESLL---DLTNKLLSATIYPPKSQIKRQKMIYHC 768
            ...:|...:|..|.|          |..|..|..:   |.:|.         :.||.:....:|.
 Frog   571 YLGIGLPTLSFGGEGDHDGKLCRPWGVCVDREGYIIVADRSNN---------RVQIFKPCGTFHH 626

  Fly   769 KFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRV 833
            |||..|...|||..|:|||.:....|:|||.:|||:|||..||:|..:|||.|.::.|..||..|
 Frog   627 KFGSLGSRPGQFDRPAGVACDNSRRIVVADKDNHRVQIFTFEGQFLLKFGEKGTKNGQFNYPWDV 691

  Fly   834 AVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG--ATILQH---PRGVTVDNKGRIIVVECKVM 893
            | |.:.|.|:|:: :..|::|::...|.|:.|:|  ..:.:|   ||||.....|.::|.:....
 Frog   692 A-VNSEGKILVSD-TRNHRVQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFSQDGYLVVTDFNNH 754

  Fly   894 RVIIFDQNGNVLHKFGC--SKHLEF--PNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG-- 952
            |::|...:....|..|.  :.:.:|  |.||.|:.:..|.::|:|.|.|::|...|.:|.:.|  
 Frog   755 RLLIIKPDCQSAHFLGTEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFEPNGSFLCKFGTQ 819

  Fly   953 --GEGITNYPIGVGINSNGEILIADNHNN 979
              |.|..:.|.|:.:..:|.|::.|..||
 Frog   820 GSGFGQMDRPSGIAVTPDGTIVVVDFGNN 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871 14/43 (33%)
Bbox2_BRAT-like 326..366 CDD:380856 13/61 (21%)
CC_brat-like 382..503 CDD:467844 30/134 (22%)
NHL_brat_like 760..1030 CDD:271329 78/233 (33%)
NHL repeat 783..819 CDD:271329 18/35 (51%)
NHL repeat 830..871 CDD:271329 13/42 (31%)
NHL repeat 874..910 CDD:271329 9/35 (26%)
NHL repeat 914..954 CDD:271329 14/45 (31%)
NHL repeat 959..997 CDD:271329 7/21 (33%)
NHL repeat 1002..1027 CDD:271329
trim71XP_004915429.1 RING-HC_TRIM71_C-VII 1..100 CDD:438251 29/121 (24%)
Bbox1_TRIM71_C-VII 163..206 CDD:380870 15/46 (33%)
Bbox2_TRIM71_C-VII 240..307 CDD:380854 16/82 (20%)
CC_brat-like 312..427 CDD:475168 27/123 (22%)
Filamin 467..562 CDD:395505 24/168 (14%)
NHL_TRIM71_like 569..853 CDD:271324 89/291 (31%)
NHL repeat 594..633 CDD:271324 11/47 (23%)
NHL repeat 641..680 CDD:271324 20/38 (53%)
NHL repeat 688..724 CDD:271324 12/37 (32%)
WD40 repeat 689..725 CDD:293791 12/37 (32%)
NHL repeat 732..772 CDD:271324 10/39 (26%)
NHL repeat 781..811 CDD:271324 10/29 (34%)
NHL repeat 827..853 CDD:271324 7/22 (32%)
Blue background indicates that the domain is not in the aligned region.

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