DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and trim2a

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001014393.1 Gene:trim2a / 100003782 ZFINID:ZDB-GENE-050327-99 Length:744 Species:Danio rerio


Alignment Length:814 Identity:197/814 - (24%)
Similarity:320/814 - (39%) Gaps:186/814 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 QQQQLLPAQPMSQLSK--------IVLAAAAQANSQEQQREDSIYGSLHPQQQQQQQQQQQRQLF 327
            :|..:||.:.::.|..        .||..:..:|..|.. .|:|.|....|           .|.
Zfish    64 RQTSILPEKGVAALQSNFFITNLMEVLKKSPNSNLSEDY-TDAINGVATGQ-----------PLS 116

  Fly   328 CPRHKQELLKFSCRTCCILVCKECIVLEHSTGLHELENVQSPGMTTSTGSTANESALQTLLADMR 392
            ||.|...:::|.|..|...:|:||...||:      |:...|   .......::::||..|..::
Zfish   117 CPNHGGNVMEFYCPPCETAMCEECTSGEHA------EHATVP---LKDVLEQHKASLQEQLDAVK 172

  Fly   393 GKIGEIVGIAGNSDQNLTKVKLQYQKAHNELNETHQFFASMLDERKTELLKELETLYTAKVNSNN 457
            .::.||........:.|.::..|.......::.|.:.....|:.||:.||.|||..|..|   ..
Zfish   173 NRLPEIESALEVLSEILQQLSSQKSSIEEMIHATFEELQKTLNVRKSVLLMELEVNYGLK---QK 234

  Fly   458 SWQQRSRDLI---DKGLATCEAVERSPAPPSSLLTEALLLRKSLEQQLQTGIQEMQLPF------ 513
            ..|.:...|:   |...::|...|::....|.  .|.||::|.:.::|.. :...:||.      
Zfish   235 VLQTQLESLLQGQDGIRSSCSFTEQALNHGSE--AEVLLVKKQMSERLDE-LANQELPLRPEENN 296

  Fly   514 EIEFMSNYQSIQAGVRNTFGYIRANSSDGGPTGMSLTSNGHGKQPPIARPTQSASNSSASSAGSG 578
            :::|:.....::..:.|....:..|:     ......:.|.|.:..|.....|.:.::....|  
Zfish   297 QLDFLVETDGLRKSIHNLGAIVTTNA-----VAAETVATGEGLRHCIVGQLTSVTVTTKDRDG-- 354

  Fly   579 HHGHHQQSHHHGHHNHHQTAHHQQLQAQSSLHGLGLGLSGASLL--DSSSSAGGAVGAFSNGGLL 641
                                              ||..:|.:||  |.|:..|..||.       
Zfish   355 ----------------------------------GLCRTGNALLIADLSAIDGSIVGE------- 378

  Fly   642 LGGRDRNALAVEQHFGELMPKRGGGGYTGS---NGSATSAVAHYNPYEKWSNGGSDNLFSSVTSG 703
              |:      |..|      |.|...:..|   .|..|..:..|:.:.:.|.      ||...:.
Zfish   379 --GK------VTDH------KNGTYEFVYSVPCEGRFTLTLKLYDQHIRGSP------FSIRANK 423

  Fly   704 VSGSSAVADAFAS-LSAVGGSVVSGAGAGGSTVSSESLLDLTNKLLSATIYPPKSQIKRQKMIYH 767
            .:..|..||.... |.:.|.|.|.                             :..|||...:|.
Zfish   424 PTDISLTADVDKKRLKSPGNSHVK-----------------------------QRAIKRPASMYS 459

  Fly   768 C--------------KFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFG 818
            .              :.|..|..:|:||...|||.::...:::||:||..:|||..:|:||.:||
Zfish   460 TGKRKENPIEDDLIFRIGTKGRNKGEFTNLQGVAASSVGKVLIADSNNQCVQIFLNDGQFKGRFG 524

  Fly   819 ECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKG 883
            ..|:...||..|..|| |..|||||:.:.. ...:.|::..|:|..|.|:..|..|:||:||..|
Zfish   525 IRGRSPGQLQRPTGVA-VHPSGDIIIADYD-NKWVSIFSSDGKFKSKIGSGKLMGPKGVSVDRNG 587

  Fly   884 RIIVVECKVMRVIIFDQNGNVLHKFG----CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 944
            .||||:.|...|.||..||.::.|||    ..|....|:...||...|:.::|...|.||||:.|
Zfish   588 HIIVVDNKSCCVFIFQPNGKLVSKFGNRGNSDKQFAGPHFAAVNQNNEVIVTDFHNHSVKVFSPE 652

  Fly   945 GQYLRQIG----GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCF 1005
            |:::.:.|    |.|..|.|.||.:::||.|::|| ..|..:.:|...|..:|.:.:..      
Zfish   653 GEFILKFGSNGEGNGQFNAPTGVAVDANGNIIVAD-WGNSRIQVFDSSGSFLSYINTSA------ 710

  Fly  1006 D-------VALMDDGSVVLA-SKDYRLYIYRYVQ 1031
            |       :||..||.||:| |.::...:|||:|
Zfish   711 DPLYGPQGLALTSDGHVVVADSGNHCFKVYRYLQ 744

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871
Bbox2_BRAT-like 326..366 CDD:380856 13/39 (33%)
CC_brat-like 382..503 CDD:467844 28/123 (23%)
NHL_brat_like 760..1030 CDD:271329 100/299 (33%)
NHL repeat 783..819 CDD:271329 14/35 (40%)
NHL repeat 830..871 CDD:271329 14/40 (35%)
NHL repeat 874..910 CDD:271329 19/39 (49%)
NHL repeat 914..954 CDD:271329 13/43 (30%)
NHL repeat 959..997 CDD:271329 12/37 (32%)
NHL repeat 1002..1027 CDD:271329 9/32 (28%)
trim2aNP_001014393.1 HRD1 <7..>107 CDD:227568 9/43 (21%)
RING_Ubox 17..64 CDD:473075 197/814 (24%)
Bbox2_TRIM2_C-VII 114..155 CDD:380882 14/49 (29%)
CC_brat-like 160..281 CDD:467844 28/125 (22%)
IG_FLMN 324..421 CDD:214720 27/159 (17%)
NHL_TRIM2_like 471..744 CDD:271330 98/281 (35%)
NHL repeat 489..528 CDD:271330 15/38 (39%)
NHL repeat 536..575 CDD:271330 14/40 (35%)
NHL repeat 578..615 CDD:271330 19/36 (53%)
NHL repeat 622..663 CDD:271330 13/40 (33%)
NHL repeat 669..711 CDD:271330 13/48 (27%)
NHL repeat 714..740 CDD:271330 8/25 (32%)
Blue background indicates that the domain is not in the aligned region.

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