DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr1D and polr2j

DIOPT Version :10

Sequence 1:NP_001260563.1 Gene:Polr1D / 35196 FlyBaseID:FBgn0086447 Length:132 Species:Drosophila melanogaster
Sequence 2:NP_001019571.1 Gene:polr2j / 554099 ZFINID:ZDB-GENE-050522-120 Length:117 Species:Danio rerio


Alignment Length:48 Identity:20/48 - (41%)
Similarity:30/48 - (62%) Gaps:0/48 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 FVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD 94
            |....|.|||||.:::.:.:.|:|.|.||.:|||.|.|:..|:|:..|
Zfish    33 FTLNKEDHTLGNIIRSQLLKDPQVLFAGYKVPHPLEHKVVIRVQTTPD 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr1DNP_001260563.1 RNAP_I_III_AC19 37..118 CDD:132907 20/48 (42%)
polr2jNP_001019571.1 RNAP_II_RPB11 14..105 CDD:132902 20/48 (42%)

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