DRSC/TRiP Functional Genomics Resources

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Protein Alignment Polr1D and rpb-11

DIOPT Version :10

Sequence 1:NP_001260563.1 Gene:Polr1D / 35196 FlyBaseID:FBgn0086447 Length:132 Species:Drosophila melanogaster
Sequence 2:NP_496942.1 Gene:rpb-11 / 175056 WormBaseID:WBGene00012187 Length:122 Species:Caenorhabditis elegans


Alignment Length:84 Identity:34/84 - (40%)
Similarity:44/84 - (52%) Gaps:6/84 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 EKNGEGSRTFVFT--NEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRDRA-IDI 99
            ||:.:.....:||  .|.|||||.||..:.:.|||.|.||..|||.|.|:..|||:..:.. .|.
 Worm    21 EKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTPADA 85

  Fly   100 LKRGLEDLEG---LCDHTI 115
            |...:.||.|   |.:|.|
 Worm    86 LTTAITDLVGELSLLEHRI 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr1DNP_001260563.1 RNAP_I_III_AC19 37..118 CDD:132907 34/84 (40%)
rpb-11NP_496942.1 RNAP_II_RPB11 14..103 CDD:132902 32/81 (40%)

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