DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cd and Gtf3c5

DIOPT Version :9

Sequence 1:NP_609947.1 Gene:l(2)37Cd / 35193 FlyBaseID:FBgn0086445 Length:480 Species:Drosophila melanogaster
Sequence 2:NP_001073410.1 Gene:Gtf3c5 / 362095 RGDID:1305173 Length:515 Species:Rattus norvegicus


Alignment Length:507 Identity:142/507 - (28%)
Similarity:235/507 - (46%) Gaps:89/507 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 IEYPGRVVNPDRMIATLGGIINVSKVLGDEVKRLALHFHPENPYNKPTFGDCTDKTGVLLSITVR 80
            :||||.|.|.|:|:.||||...||::..|..|||.|:|.|::||..|...:....:.:||.:..|
  Rat    27 VEYPGVVQNEDKMLQTLGGEEGVSRIYTDPTKRLELYFRPKDPYCHPVCANRFSTSSLLLRVRKR 91

  Fly    81 RHKK-----DKQRPPEYF-VRVLGHCSRSFTFETLCDFQYLPLWSTPKSDNANAAQELTYALDQL 139
            ..::     |:..|...| :.:||..|..:.|:.:.|||||.:.:  ::|..:.:.     .|::
  Rat    92 TRRRRGVPGDEAHPHVTFDLEILGTISTIYKFQGMSDFQYLAVHT--ETDGTHVSM-----YDRV 149

  Fly   140 ---KPKNTTDLDYFKRRHSQLLALPELFTHVDTVYAGTYRID---------PSEDGQHEVLGVQS 192
               ||:.    :.|..:...|...|.:|:.:||.....||.:         ||..|:: ::|:..
  Rat   150 LMRKPEK----EEFFHQELPLYIPPPIFSRLDTPVDYFYRPETQHREGYHNPSISGEN-LIGLSR 209

  Fly   193 KSSYDNQGVVSF--NMVDSFPTQADSQNLKRLKVKYVSDEQLALVKKLFDDCPIWTRIALQYESG 255
            .....|...|:|  ..|...|.:|..|..|:.....:..:....::||||..|||:|.|::....
  Rat   210 ARRPHNAIFVNFEDTEVPEQPLEAAVQTWKKACTNPIDQKVEEELRKLFDIRPIWSRNAVKSNVS 274

  Fly   256 LTNDKLKCITPSLAFYFSNGPWRTLYVRFGYDPRKDFNSRYYQTFDFRLRFSTGLSEFVYAKKF- 319
            :..||||.:.|.:|:|...||||:|::||||||||..:::.||..|||:|  .|: ::.|..:. 
  Rat   275 VHPDKLKILLPYMAYYMITGPWRSLWIRFGYDPRKHPDAKIYQVLDFRIR--CGM-KYGYGSRDM 336

  Fly   320 -VKQRRAA----------NAPFAPIEDRVSDLVQDI-----DYP---------------YFDEHK 353
             ||.:|:.          ..|..|:  .:.||.|.:     |.|               .|.|..
  Rat   337 PVKAKRSTYNYSLPITVKKTPSQPV--TMHDLKQGLGPSGSDGPRKLTYNKYKLKDSVYIFREGA 399

  Fly   354 LPRSRQCMLRYCDVRMTRIQEMLEKIPTPLTGAVCNERTGWLPPGFDAQVRQIVCASISELLRNH 418
            ||..||...:.||:.:..:|:::.:  ...|.:||.|:.||..|.....:|..:...|.:.:|:.
  Rat   400 LPPYRQMFYQLCDLNVEELQKIVHR--NDGTESVCTEKDGWCLPKTTDHLRDTMSLMILQTIRSE 462

  Fly   419 ------------YRKENLTAEVEAVTQADEEDEDEAEDEETQEEDMELDETQ 458
                        :.||.|..|      :.||:|:|.|:||.:..|...:|.:
  Rat   463 RPALFSNTGKADHGKEQLMFE------SGEEEEEEEEEEEFKPSDGSENEME 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CdNP_609947.1 Tau95 13..303 CDD:286777 95/306 (31%)
Gtf3c5NP_001073410.1 Tau95 24..322 CDD:286777 95/306 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341761
Domainoid 1 1.000 86 1.000 Domainoid score I7937
eggNOG 1 0.900 - - E1_KOG2473
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40806
Inparanoid 1 1.050 166 1.000 Inparanoid score I4081
OMA 1 1.010 - - QHG49405
OrthoDB 1 1.010 - - D1111142at2759
OrthoFinder 1 1.000 - - FOG0003593
OrthoInspector 1 1.000 - - oto96517
orthoMCL 1 0.900 - - OOG6_103019
Panther 1 1.100 - - LDO PTHR13230
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2465
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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