DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)37Cb and PRP2

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_014408.1 Gene:PRP2 / 855745 SGDID:S000005294 Length:876 Species:Saccharomyces cerevisiae


Alignment Length:938 Identity:390/938 - (41%)
Similarity:550/938 - (58%) Gaps:130/938 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SGKNR-KRT------------ASSSSSGEEPDSEEESRLKDLQERDEFASRLKKRDDDRTRNVVD 53
            :||.| |||            ...||.|||.|.|.:.:...||        ||:...|..: |..
Yeast     8 TGKRRVKRTYEVTRQNDNAVRIEPSSLGEEEDKEAKDKNSALQ--------LKRSRYDPNK-VFS 63

  Fly    54 STGGRRAIEEATKRLKLEHEDRDKIVPHLRLQSRRQYLEKRKDDKVAELEADILDDEYLFDESVL 118
            :|      .:..::..|:.|         :|.|:::  ..:.|:|:..      ::|....:.:|
Yeast    64 NT------NQGPEKNNLKGE---------QLGSQKK--SSKYDEKITS------NNELTTKKGLL 105

  Fly   119 TKREKEER-EYKKQLLNIAKEH--EKARELERIQRYNMPQDLKKGERSEYVEVDEFEKQPNSEQK 180
            ...|.|.: .......|:...|  :.|:|:::|.|                            |:
Yeast   106 GDSENETKYASSNSKFNVEVTHKIKNAKEIDKINR----------------------------QR 142

  Fly   181 KWEAEQLASARFHFGAKD------AKAEEEYELLLDD--QIDFI--QALTLDGSREKSSSRQPEL 235
            .||.:||.:|.  .|..|      .:..::|:.:.|.  .||:.  :...|...:.:..:|..:.
Yeast   143 MWEEQQLRNAM--AGQSDHPDDITLEGSDKYDYVFDTDAMIDYTNEEDDLLPEEKLQYEARLAQA 205

  Fly   236 TEKERKR-LTLDETRRSLPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVPQYLVEAGFTKDKK 299
            .|.|.|| ||:.|.|:.|||:.:|::|:..:|::|||||.||||||||||:||||||.|||...|
Yeast   206 LETEEKRILTIQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGK 270

  Fly   300 M-IGCTQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFED-CTSDRTILKYMTDGTLHREFLSEP 362
            : |..||||||||.|||||||:||.|.||.||||.||||| .|.::|:|||||||.|.||||::.
Yeast   271 LQIAITQPRRVAATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDS 335

  Fly   363 DLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPELKLLISSATLDAEKFSAFFDDAPIFRIPG 427
            .|:.||.::|||||||||.||||.||:|||...||.|||||||||::|:|||.|||:.|||.:||
Yeast   336 KLSKYSCIMIDEAHERTLATDILIGLLKDILPQRPTLKLLISSATMNAKKFSEFFDNCPIFNVPG 400

  Fly   428 RRYPVDIFYTKAPEADYIDACCVSVLQIHATQPL-GDILVFLTGQDEIETCQEVLHDRVKRLGSK 491
            |||||||.||..|||:||.|...::.|||.||.| ||||||||||:|||..:..|.:.:.:|||:
Yeast   401 RRYPVDIHYTLQPEANYIHAAITTIFQIHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSKLGSR 465

  Fly   492 IRELIVIPVYANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVIDPGFAKQNNFNSR 556
            .:::|:.|:|||||.:.|.|||:|||.|.|||:|||||||||||||.|.|||||||.|:|::...
Yeast   466 TKQMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKENSYVPS 530

  Fly   557 TGMESLMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLK 621
            |||..|:.||.|:||.:||||||||..||||||::|.|:|.||||....|||.|.||.|.||:|.
Yeast   531 TGMTQLLTVPCSRASVDQRAGRAGRVGPGKCFRIFTKWSYLHELELMPKPEITRTNLSNTVLLLL 595

  Fly   622 ALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKLGRRMAEFPVDPMMGKML-LASE 685
            :||:.|||.|..:|.|...||..:||.||.|||||..|.:|:||:.|.|||.:|...|:| .|:.
Yeast   596 SLGVTDLIKFPLMDKPSIPTLRKSLENLYILGALNSKGTITRLGKMMCEFPCEPEFAKVLYTAAT 660

  Fly   686 KYKCS---EEMVTIAAMLSVNSAIFYRPKDKIIHADTARKNFNHMHGDHLSLLQVYNQWAETDYS 747
            ..:|.   ||.:||.:||....::|...|     .|.|....:.:..||:..|:::|||..:.:|
Yeast   661 HEQCQGVLEECLTIVSMLHETPSLFIGQK-----RDAAASVLSEVESDHILYLEIFNQWRNSKFS 720

  Fly   748 TQWCYENFIQYRSMKRARDVREQL------VGLMQ-----RVEIDMVSCLPETVNVR--KAATAG 799
            ..||.::.||:::|.|.|::|.||      |||::     |::|..::   ..:|.|  :...:|
Yeast   721 RSWCQDHKIQFKTMLRVRNIRNQLFRCSEKVGLVEKNDQARMKIGNIA---GYINARITRCFISG 782

  Fly   800 YFYHVARLSKGGHYKTIKHNQ---TVMIHPNSSLF-------EELPRWVLYHELVFTSKEYMRQV 854
            :..::.:|...| |:|:..:.   .|.:||.|.||       :...::|||.:|:.||||::|..
Yeast   783 FPMNIVQLGPTG-YQTMGRSSGGLNVSVHPTSILFVNHKEKAQRPSKYVLYQQLMLTSKEFIRDC 846

  Fly   855 IEI-ESKWLLEVAPHYYKAKELEDSTNK 881
            :.| :.:||:::.|..:| ..::|.||:
Yeast   847 LVIPKEEWLIDMVPQIFK-DLIDDKTNR 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 336/676 (50%)
DEXDc 269..408 CDD:238005 100/140 (71%)
HELICc 491..581 CDD:197757 56/89 (63%)
HA2 651..735 CDD:214852 30/87 (34%)
OB_NTP_bind 770..869 CDD:285018 33/122 (27%)
PRP2NP_014408.1 PTZ00121 <7..174 CDD:173412 45/227 (20%)
HrpA 185..876 CDD:224557 342/699 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344894
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53574
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100085
Panther 1 1.100 - - LDO PTHR18934
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X141
TreeFam 1 0.960 - -
109.710

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