DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cb and FAS4

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_001320693.1 Gene:FAS4 / 840232 AraportID:AT1G33390 Length:1237 Species:Arabidopsis thaliana


Alignment Length:1105 Identity:297/1105 - (26%)
Similarity:471/1105 - (42%) Gaps:299/1105 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 KRDDDRTRNVVDSTGGRRAIEEATKRLKLEHEDRDKIVPHLRLQSRRQYLEKRKDDKVAEL---- 102
            |..|....|  ::||.::     :::.||...     |..:..:|:::.|:|.::||..|:    
plant    26 KMQDKLNSN--NNTGSKK-----SRKRKLNSN-----VNTVACKSQKRKLKKLEEDKEKEILFSK 78

  Fly   103 EADILDDEYLFDESV-------------LTKREKEEREYKKQLLNIAKEHEKARELERIQRYNMP 154
            .|::| |:|...|.|             .||.||..|..:.....:..||..    |.:::.:..
plant    79 TAELL-DKYKISEDVSSLLQSSKVIGRSATKLEKRRRAMQLSKAGVETEHSD----ESVEQNDND 138

  Fly   155 QD--LKKGERSEYVEVDEFEKQPNSEQKKWEAEQLASARFHFGAKDAKAEEEYELLLDDQIDFIQ 217
            .|  :.:....|:||::......:|||:...|:.:.||.          |...:|.:||.:|.|.
plant   139 DDSCMDEPTTPEHVEIETPTFVTDSEQQLVHADLMISAE----------ESSSKLEVDDTVDMIP 193

  Fly   218 ALT--------LDGSREK-----SSSRQPELTEKERKRLTLDETRRSLPVYPFKEDLIAAVKEHQ 269
            ..|        :||..|.     ...|.|.......:...::|||:.||:...:::::.|:..|.
plant   194 LTTCRDDDEDSMDGLIENEDVTVQGPRVPAFVVHVSRPAEVEETRKDLPIVMMEQEIMEAINRHP 258

  Fly   270 VLIIEGETGSGKTTQVPQYLVEAG-----FTKDKKMIGCTQPRRVAAMSVAARVAEEMGVKLGNE 329
            .:||.|:||.||||||||:|.|||     |:....:||.|||||||.::.|.|||.|:||:||.|
plant   259 AVIISGQTGCGKTTQVPQFLYEAGFGSKQFSSRSGIIGITQPRRVAVLATAKRVAFELGVRLGKE 323

  Fly   330 VGYSIRFEDCTSDRTILKYMTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIAR 394
            ||:.:|::....:.:.:|:||||.|.||..::..|..|||:|:||||||:|:||||.|::..:.:
plant   324 VGFQVRYDKKIGENSSIKFMTDGILLREIQNDFLLRRYSVIILDEAHERSLNTDILIGMLTRVIK 388

  Fly   395 FRPE-----------------------LKLLISSATLDAEKFSA----FFDDAPIFRIPGRRYPV 432
            .|.|                       |||::.||||..|.|.:    |.:..|:..:|.|:|||
plant   389 IRQEYYEEQQKSLQSGGTVTSECQITPLKLILMSATLRVEDFVSGKRLFPNIPPLIEVPTRQYPV 453

  Fly   433 DIFYTKAPE-ADYIDACCVSVLQIHATQPLGDILVFLTGQDEIETCQEVLHDRVKRL-------- 488
            .|.::|..| .|||......|:.||...|.|.||||:|||.|::...|.|....|.|        
plant   454 TIHFSKKTEIVDYIGEAYKKVMSIHKKLPQGGILVFVTGQREVDYLCEKLRKSSKELVVQAAKRD 518

  Fly   489 -------------GSKIRE---------------------------------------------- 494
                         |..::|                                              
plant   519 AYVKKKCDDGSFGGVDMKEIAEAFDDDSNNQNSRFSSHGEDPSDIGDGNYDDDFEEEDMYESDED 583

  Fly   495 ---------------------------------------------------------------LI 496
                                                                           |.
plant   584 RDWETVDDGFASSFVEEGKLDALRAAFNALADKNGSVSAEPAKSIAAENQEAEQVKNKFSPGKLR 648

  Fly   497 VIPVYANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVIDPGFAKQNNFNSRTGMES 561
            |:|:||.|....|.::||......|.|::|||:|||||||..|.||:|.|..|..|::|:|||||
plant   649 VLPLYAMLSPAAQLRVFEEVEKEERLVVVATNVAETSLTIPGIKYVVDTGRVKVKNYDSKTGMES 713

  Fly   562 LMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGIN 626
            ..|..||:|||:|||||||||.||.|:|||::..:.:..|::::|||.::.:...:|::|::.|.
plant   714 YEVDWISQASASQRAGRAGRTGPGHCYRLYSSAVFSNIFEESSLPEIMKVPVDGVILLMKSMNIP 778

  Fly   627 DLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKLGRRMAEFPVDPMMGKMLLA-------S 684
            .:.:|.|..||....:..|...|.||.||:.:|.||.||:.|:.:|:.|...:|||.       :
plant   779 KVENFPFPTPPEPSAIREAERCLKALEALDSNGGLTPLGKAMSHYPMSPRHSRMLLTVIQMLKET 843

  Fly   685 EKYKCSE-----EMVTIAAMLSVNSAIF----------------------YRPKDKIIHADTARK 722
            ..|..:.     .:..:||:...|..|.                      .|.||:......||.
plant   844 RNYSRANLILGYAVAAVAALSLPNPLIMEFEGEKKNESKDADKTVKQEDKQRKKDRKEKIKAARD 908

  Fly   723 NFNHMHGDHLSLLQVYNQWAETDYSTQWCYENFIQYRSMKRARDVREQLV--------------- 772
            .|::...|.|::....:.:..::....:|..|.:..::|.....:::||:               
plant   909 RFSNPSSDALTVAYALHSFEVSENGMGFCEANGLHLKTMDEMSKLKDQLLRLVFNCCKPSETEDS 973

  Fly   773 -----GLMQ------RVEIDMVSCLPETVN----VRKAATAGYFYHVARLSKGGHYKTIKHNQTV 822
                 |.:|      |:.....|..|...|    :.:|..||:...|||.::...|:.....:.|
plant   974 FSWTHGTIQDVEKSWRITTSTSSKTPLLQNEEELLGEAICAGWADRVARKTRATEYQACAVQEPV 1038

  Fly   823 MIHPNSSLFEELPRWVLYHELVFTSKEYMRQVIEIESKWLLEVAPH-------------YYKAKE 874
            .:|..|||....|..::|.||:.|::.||.....:..:||::.|..             ||.::|
plant  1039 FLHRWSSLINSAPELLVYSELLLTNRPYMHGATRVRPEWLVKHAKSLCVFSAPLKDPKPYYSSEE 1103

  Fly   875  874
            plant  1104  1103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 248/876 (28%)
DEXDc 269..408 CDD:238005 72/166 (43%)
HELICc 491..581 CDD:197757 47/198 (24%)
HA2 651..735 CDD:214852 28/117 (24%)
OB_NTP_bind 770..869 CDD:285018 30/141 (21%)
FAS4NP_001320693.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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