DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cb and AT1G27900

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_564296.1 Gene:AT1G27900 / 839683 AraportID:AT1G27900 Length:700 Species:Arabidopsis thaliana


Alignment Length:692 Identity:291/692 - (42%)
Similarity:424/692 - (61%) Gaps:62/692 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 SLPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVPQYLVEAGFTKDKKMIGCTQPRRVAAMSVA 315
            :||:..|:|.::..|:::.|::|.|||||||:||:.|.|...|:|| ..:|..||||||||:|||
plant     3 NLPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTK-SGVIAITQPRRVAAVSVA 66

  Fly   316 ARVAEEMGVKLGNEVGYSIRFEDCTSDRTILKYMTDGTLHREFLSEPDLASYSVMIIDEAHERTL 380
            .|||:|:.|.||.:|||:|||||.|:.:|.:||:|||.|.||.||.|.|..|||:|:||||||:|
plant    67 RRVAQELDVPLGEDVGYAIRFEDRTTSKTRIKYLTDGVLLRESLSNPMLDDYSVIILDEAHERSL 131

  Fly   381 HTDILFGLVKDIARFR-PELKLLISSATLDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADY 444
            :||||.||||.:.|.| ...|:||:|||||.||.|.||...|:..:||:.|||:|.|:|.....|
plant   132 NTDILLGLVKRLVRIRASNFKVLITSATLDGEKVSEFFSGCPVLNVPGKLYPVEILYSKERPVSY 196

  Fly   445 IDACCVSVLQIHATQPLGDILVFLTGQDEIETCQEVLHDRVKRLGSKIREL--------IVIPVY 501
            |::.....:.||..:|.||||:|:||||:||..       |.||..|:|.|        |:.|::
plant   197 IESSLKVAIDIHVREPEGDILIFMTGQDDIEKL-------VSRLEEKVRSLAEGSCMDAIIYPLH 254

  Fly   502 ANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVIDPGFAKQNNFNSRTGMESLMVVP 566
            .:||.:||.::|.|.|||.|:.|::|||||||||:|.::||||.|:.||..:|..:||.||.|:.
plant   255 GSLPPEMQVRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQ 319

  Fly   567 ISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGIN--DLI 629
            |||..|||||||||||.||||:|||....|:.:..|.|:|||||.:|..:||.||:|.:.  |::
plant   320 ISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDFLDATIPEIQRTSLAGSVLYLKSLDLPDIDIL 384

  Fly   630 HFDFLDPPPHETLVLALEQLYALGALNHHGELTKLGRRMAEFPVDPMMGKMLLASEKYKCSEEMV 694
            .|||||.|..|:|..||:|||.:.|::.:|.:|::||.|::.|::|.:.:.|:.:.:..|..:.:
plant   385 KFDFLDAPSSESLEDALKQLYFIDAIDENGAITRIGRTMSDLPLEPSLSRTLIEANETGCLSQAL 449

  Fly   695 TIAAMLSVNSAIF---YRPKD-KIIHADTARKNFNHMHGDHLSLLQVYNQWAETDYSTQWCYENF 755
            |:.||||..:.:.   .:|.: |..|.:.:.......:|||:.|||::..|..|:|...||.||.
plant   450 TVVAMLSAETTLLPARSKPSEKKRKHDEDSNLPNGSGYGDHIQLLQIFESWDRTNYDPVWCKENG 514

  Fly   756 IQYRSMKRARDVREQLVGLMQRVEIDMV---------SCLPETVNVRKAATAGYFYHVA-RLSKG 810
            :|.|.|...:|||.||..:||::..|.:         |...:...:|||...|....:| |:.:.
plant   515 MQVRGMVFVKDVRRQLCQIMQKISKDRLEVGADGRKSSSRDDYRKLRKALCVGNANQIAERMLRH 579

  Fly   811 GHYKTIK-HNQTVMIHPNSSLFEE----LPRWVLYHELVFTSKEYMRQVIEIESKWLLEVAPHYY 870
            ..|:|:. .:|.|.:||:|.|..:    :|.:|:||||:.|::.:||.|..::..|   |||...
plant   580 NGYRTLSFQSQLVQVHPSSVLSADNDGMMPNYVVYHELISTTRPFMRNVCAVDMAW---VAPIKR 641

  Fly   871 KAKEL----------------EDST-----NKKMPKVAGRAE 891
            |.::|                |:.|     |.:.|.|:...|
plant   642 KIEKLNVRKLSGGPAPSFKVPEEKTELSKNNAETPAVSENVE 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 281/645 (44%)
DEXDc 269..408 CDD:238005 83/139 (60%)
HELICc 491..581 CDD:197757 50/97 (52%)
HA2 651..735 CDD:214852 21/87 (24%)
OB_NTP_bind 770..869 CDD:285018 34/113 (30%)
AT1G27900NP_564296.1 HrpA 3..639 CDD:224557 282/646 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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