DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)37Cb and MEE29

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_181077.3 Gene:MEE29 / 818101 AraportID:AT2G35340 Length:1044 Species:Arabidopsis thaliana


Alignment Length:931 Identity:532/931 - (57%)
Similarity:678/931 - (72%) Gaps:50/931 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SGKNRKRTASSSSSGEEPDSE-------------------------EESRLKDLQERDEFASRLK 41
            |.|.:||....|...|:.|.|                         ||.||:|.:||:|....|:
plant   120 SDKGQKRFRKKSEQLEDDDDEVVIVREDKRNVRRKVSEDEDDGTESEEERLRDQREREELEQHLR 184

  Fly    42 KRDDDRTRNVVDSTGGRRAIEEATKR-LKLEHEDRDKIVPHLRLQSRRQYLEKRKDDKVAELEAD 105
            :||..|||.:.:....::..||..:| ..::..|    :..||..|.::|::|||..||.||:.|
plant   185 ERDTARTRKLTEPKMSKKEQEEFVRRDSAVDKGD----IESLRKFSWQEYMKKRKQKKVLELKDD 245

  Fly   106 ILDDEYLFDESVLTKREKEEREYKKQLLNIAKEHEKARELERIQRYNMPQ--------DLKKG-- 160
            |.|:.|||.:..||:||..|..||:::..:.|  :..:|.:.:..|.||.        |.:|.  
plant   246 IEDEPYLFGDEKLTEREIREFRYKREIYELIK--KSTQEEDNVGEYRMPDAYDQQGSVDQEKRFA 308

  Fly   161 -ERSEYVEVDEFEK-QPNSEQKKWEAEQLASARFHFGAKDAKAEEEYELLLDDQIDFIQALTLDG 223
             ....|.::...|| .|.:||:.||..|:.:|...||||:.:..:.||.:.:||||||:|..|.|
plant   309 VSVQRYRDMGSAEKMNPFAEQEAWEDHQIENAALKFGAKNKEVSDNYEFVFEDQIDFIKASVLAG 373

  Fly   224 SR-EKSSSRQPELTEKERKRL-TLDETRRSLPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVP 286
            .. |.....:|......:... .|.|.|::||:|.:::.|:.|||:||||||.||||||||||:|
plant   374 DNYEDEMHAKPSQDSAGKSAFHMLQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIP 438

  Fly   287 QYLVEAGFTKDKKMIGCTQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCTSDRTILKYMTD 351
            |||.|||:||..| :||||||||||||||||||:|||.|||:|||||||||||||::||||||||
plant   439 QYLHEAGYTKLGK-VGCTQPRRVAAMSVAARVAQEMGGKLGHEVGYSIRFEDCTSEKTILKYMTD 502

  Fly   352 GTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPELKLLISSATLDAEKFSAF 416
            |.|.||.|.||||.||||:|:||||||||.|||||||||||||.||:|||||||||:||||||.|
plant   503 GMLLRELLGEPDLGSYSVIIVDEAHERTLRTDILFGLVKDIARARPDLKLLISSATMDAEKFSDF 567

  Fly   417 FDDAPIFRIPGRRYPVDIFYTKAPEADYIDACCVSVLQIHATQPLGDILVFLTGQDEIETCQEVL 481
            ||.|||||.|||||||||.:|.||||||:||...:||.||..:||||:||||.||:|||..:|.|
plant   568 FDQAPIFRFPGRRYPVDICFTTAPEADYMDAAITTVLTIHVKEPLGDVLVFLPGQEEIEAVEENL 632

  Fly   482 HDRVKRLGSKIRELIVIPVYANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVIDPG 546
            ..:::.||:||||||:.|:||||||::|||||||||..||||:|||||||||||||.|.||:|||
plant   633 KHKIRGLGTKIRELIICPIYANLPSELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPG 697

  Fly   547 FAKQNNFNSRTGMESLMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNTVPEIQRI 611
            |:|..::|.|||||||:|.|||||||.||.||||||:||||:|||||:.|.::|||||||||||.
plant   698 FSKMKSYNPRTGMESLLVTPISKASATQRTGRAGRTSPGKCYRLYTAFNYYNDLEDNTVPEIQRT 762

  Fly   612 NLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKLGRRMAEFPVDPM 676
            ||.:.||.||:|||::|::|||:||||.|.|:.:||.|:||||||..|||||.||||||||:|||
plant   763 NLASVVLSLKSLGIHNLLNFDFMDPPPSEALIKSLELLFALGALNQLGELTKAGRRMAEFPLDPM 827

  Fly   677 MGKMLLASEKYKCSEEMVTIAAMLSVNSAIFYRPKDKIIHADTARKNFNHMH--GDHLSLLQVYN 739
            :.||::.|:|||||:|:::||||||:..:||||||||.:|||.|.||| |:.  |||::.|::||
plant   828 LSKMIVVSDKYKCSDEIISIAAMLSIGPSIFYRPKDKQVHADNAMKNF-HVGNVGDHIAFLKIYN 891

  Fly   740 QWAETDYSTQWCYENFIQYRSMKRARDVREQLVGLMQRVEIDMVSCLPETVNVRKAATAGYFYHV 804
            .|.||:|||||||||:||.||||||||:|:||.||::|||||:.|...|..::||:..||:|.|.
plant   892 SWKETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIDVSSNANELDSIRKSIVAGFFPHT 956

  Fly   805 ARLSKGGHYKTIKHNQTVMIHPNSSLFEELPRWVLYHELVFTSKEYMRQVIEIESKWLLEVAPHY 869
            |:|.|.|.|:|:||.|||.|||.|.|.:.|||||:||:||.|||||||||.|::.:||:|:||||
plant   957 AKLQKNGSYRTVKHPQTVHIHPASGLSQVLPRWVVYHQLVLTSKEYMRQVTELKPEWLIEIAPHY 1021

  Fly   870 YKAKELEDSTNKKMPKVAGRA 890
            |:.|::||:|:|||||.:|||
plant  1022 YQLKDVEDATSKKMPKTSGRA 1042

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 434/648 (67%)
DEXDc 269..408 CDD:238005 115/138 (83%)
HELICc 491..581 CDD:197757 68/89 (76%)
HA2 651..735 CDD:214852 56/85 (66%)
OB_NTP_bind 770..869 CDD:285018 57/98 (58%)
MEE29NP_181077.3 DEXDc 399..574 CDD:214692 137/175 (78%)
DEXDc 421..559 CDD:238005 115/138 (83%)
Helicase_C 597..732 CDD:278689 91/134 (68%)
HA2 802..887 CDD:214852 56/85 (66%)
OB_NTP_bind 911..1021 CDD:285018 66/109 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 440 1.000 Domainoid score I102
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2658
Inparanoid 1 1.050 1059 1.000 Inparanoid score I36
OMA 1 1.010 - - QHG53574
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 1 1.000 - - otm2814
orthoMCL 1 0.900 - - OOG6_100085
Panther 1 1.100 - - O PTHR18934
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X141
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.