DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cb and dhx40

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_001184155.2 Gene:dhx40 / 733877 XenbaseID:XB-GENE-995801 Length:744 Species:Xenopus tropicalis


Alignment Length:682 Identity:279/682 - (40%)
Similarity:415/682 - (60%) Gaps:47/682 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 LPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVPQYLVEAGFTKDKKMIGCTQPRRVAAMSVAA 316
            ||::.:|.:|:.|..::..||:.|:||||||||:||||.:|||.|: .|||.|||||||.:|||.
 Frog    21 LPIHRWKGELVKAATDNPFLIVMGDTGSGKTTQLPQYLYKAGFGKN-GMIGVTQPRRVATISVAQ 84

  Fly   317 RVAEEMGVKLGNEVGYSIRFEDCTSDRTILKYMTDGTLHREFLSEPDLASYSVMIIDEAHERTLH 381
            ||||||...||:.|||.:||:||||:||::||||||.|.|..|::|||..||.:::||||||:|.
 Frog    85 RVAEEMNCSLGSTVGYQVRFDDCTSERTVIKYMTDGCLLRNTLADPDLTKYSTIVLDEAHERSLS 149

  Fly   382 TDILFGLVK------DIARFRPELKLLISSATLDAEKFSAFFDDAPIFRIPGRRYPV-DIFYTKA 439
            |||||||:|      ...|.:..||:::.||||:::|.|:||.:.|:..|||:.:|: :.|....
 Frog   150 TDILFGLLKKQFQLRSFKRRKYPLKVIVMSATLESQKLSSFFGNCPVVTIPGKVFPIKERFLNLI 214

  Fly   440 PEAD-----YIDACCVSVLQIHATQPLGDILVFLTGQDEIETCQEVL----------HDRVKRLG 489
            ...|     |:.......||.|..:|.||||||||||.|||....:|          ||...|  
 Frog   215 GPRDKDSTAYVTETVKITLQTHLNEPEGDILVFLTGQAEIERACNLLFKKAEGIDYRHDVYDR-- 277

  Fly   490 SKIRELIVIPVYANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVIDPGFAKQNNFN 554
             .:..|:::|:|.::|:|.|.:||.|.|...||.:|:||||.||:||:.|.||||.||.||.|:|
 Frog   278 -SVEGLLILPLYGSMPTDQQKRIFVPPPSGIRKCVLSTNIAATSVTIEGIRYVIDSGFVKQLNYN 341

  Fly   555 SRTGMESLMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLM 619
            .|.|::.|.:|||||:.|.||||||||||||||||:|:...:...:.|:.:|:|:|.:|.:.:|.
 Frog   342 PRAGLDILEIVPISKSEAVQRAGRAGRTAPGKCFRIYSEEFWDKCMPDHMIPDIKRTSLASVILT 406

  Fly   620 LKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKLGRRMAEFPVDPMMGKMLLAS 684
            ||.|.|:|:|.|.:||.|....::.||::||...|::..|.:||||..:.|||:.|.:...::.:
 Frog   407 LKCLDIHDVIRFPYLDQPEERHILEALKKLYQCSAIDRTGCVTKLGHFIIEFPLSPNLACAVIKA 471

  Fly   685 EKYKCSEEMVTIAAMLSVNSAIFYR--PKDKIIHADTARKNFNHMHG---DHLSLLQVYNQWAET 744
            ..:.|.:.::.:||||||.. :|.:  ...|...|....:..:.:.|   |..:||.::.|...:
 Frog   472 TSFGCEDLLLPVAAMLSVEH-VFIQSGQSQKQKEAGLGHEELSQLAGGCNDFATLLYIFEQCKAS 535

  Fly   745 DYSTQWCYENFIQYRSMKRARDVREQLVGLMQRVEIDMVSCL-----PETVNVRKAATAGYFYHV 804
            .....||:||.|.:|::|.|.:|.:||..:..|::.:....:     |....:|:...||||.:|
 Frog   536 PKPASWCHENGIHWRALKSALNVEKQLKEITNRLKQNKDFPVEKFDGPRNEMLRRCLCAGYFSNV 600

  Fly   805 ARLSKGGHYKTIK-HNQTVMIHPNSSLF--EELPRWVLYHELVFTSKEYMRQVIEIESKWLLEVA 866
            ||.|.|..:.|:. |...:.|||:|:||  |....|:|:|.::.|||.::|.|..|..:|:.::.
 Frog   601 ARRSVGRTFCTMDGHGSMIHIHPSSALFGKESELEWILFHNVLVTSKIFVRTVCPIRYEWVKDLL 665

  Fly   867 P--HYYKAKEL-----EDSTNKKMPKVAGRAE 891
            |  |...|.||     |:.|.:::.|...:.|
 Frog   666 PKLHDIDAYELSNVAREEVTAEEIIKWESKGE 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 270/649 (42%)
DEXDc 269..408 CDD:238005 85/144 (59%)
HELICc 491..581 CDD:197757 47/89 (53%)
HA2 651..735 CDD:214852 22/88 (25%)
OB_NTP_bind 770..869 CDD:285018 34/108 (31%)
dhx40NP_001184155.2 HrpA 1..700 CDD:224557 279/682 (41%)
DEXDc 40..182 CDD:238005 85/142 (60%)
HELICc 281..368 CDD:197757 47/86 (55%)
HA2 441..526 CDD:214852 22/85 (26%)
OB_NTP_bind 560..668 CDD:285018 34/107 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D113216at33208
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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