DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)37Cb and dhx34

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:XP_017207416.1 Gene:dhx34 / 555838 ZFINID:ZDB-GENE-061207-30 Length:1154 Species:Danio rerio


Alignment Length:710 Identity:232/710 - (32%)
Similarity:373/710 - (52%) Gaps:105/710 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 ESVLTKREKEEREYKKQLLNIAKEHEKARELERIQRYNMPQDLKKGER------SEYVEVDEFEK 173
            :|...|:|....:..:|..::|....||::........:|:|.....|      |..:|    |:
Zfish    51 QSFKAKKEMTASKSSRQEKHVALREGKAKKKTGCVDLGLPKDYDARYRINISVCSRDIE----ER 111

  Fly   174 QPNSEQKKWEA-----EQLASAR---FHFGAKDAKAEEEYELLLDDQIDFIQALTLDGSREKSSS 230
            ...|:.::.|:     :::...|   .||                          ||.::::|.|
Zfish   112 LAGSDHRRRESSGPGRQEITDGRLALLHF--------------------------LDFNQKQSFS 150

  Fly   231 RQPELTEKERKRLTLDETRRSLPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVPQYLVEAGFT 295
            :..:|..::          :|||::.:::.::..|:.|.|:::.|:||.||:|||||||:.:|..
Zfish   151 KLSKLRREQ----------KSLPIFQYRDKIVELVRTHPVVVVAGDTGCGKSTQVPQYLLASGIN 205

  Fly   296 KDKKMIGCTQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCTSDRTILKYMTDGTLHREFLS 360
            .    |.||||||:|.:|:|.||:.|...:.|::|||.||||...:..|.|.::|:|.|.|:...
Zfish   206 N----IACTQPRRIACISLAKRVSFESLNQYGSKVGYQIRFETSRTLATKLLFLTEGLLLRQIQQ 266

  Fly   361 EPDLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPELKLLISSATLDAEKFSAFFDDAPIFRI 425
            :..|..|.|:|:||.|||.||.|.|.|:::.:...||:|:|::.|||::.:.||::|:|||:.::
Zfish   267 DASLGQYQVLIVDEVHERHLHCDFLLGVLRSLLSLRPDLRLVLMSATINIKLFSSYFNDAPVLQV 331

  Fly   426 PGRRYPVDIFYTKAPEADYIDAC-------CVSVL----QIHATQPLGDILVFLTGQDEIETCQE 479
            |||.:|:.:.|...|..:.:...       .:.||    |.:..:..||:|:||:|..||.|.||
Zfish   332 PGRLFPIQVIYQPIPPEEQVSRSEKLDPRPYLRVLQGIDQRYPQEERGDLLLFLSGVAEISTIQE 396

  Fly   480 VLHDRVKRLGSKIRELIVIPVYANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVID 544
            .    .:...:..:..||:|:::.|....|.|:|:..||..||.|::|||||||:|||.:.:|:|
Zfish   397 A----CQTYATHTQRWIVLPLHSTLSLAQQDKVFDIAPPGVRKCIISTNIAETSVTIDGVRFVVD 457

  Fly   545 PGFAKQNNFNSRTGMESLMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNTVPEIQ 609
            .|..|:.:|:.:..|:.|....||:||:.||.||||||.||.|:|||:...| .......||||.
Zfish   458 SGKVKEMSFDPKAKMQRLQEFWISRASSEQRKGRAGRTGPGVCYRLYSESDY-DAFAPYPVPEIH 521

  Fly   610 RINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKLGRRMAEFPVD 674
            |:.|.:.:|.:|::|:.|...|.|:||||..::..|:..|...|||:.|||||.:||.:|:.|||
Zfish   522 RVALDSLILQMKSMGLGDPRTFTFIDPPPASSIQTAVTYLREQGALDEHGELTSIGRLLAQLPVD 586

  Fly   675 PMMGKMLLASEKYKCSEEMVTIAAMLSVNSAIFYRPKDKIIHADTARKNFNHMHGDHLSLLQVYN 739
            .::||||:....:...|.::|:||.|||.|. |.|.........|||:..|..|||..:|:..:|
Zfish   587 VVIGKMLVLGSVFNLVEPVLTVAAALSVQSP-FLRSAQHNPDCSTARQPLNSNHGDPFTLMNTFN 650

  Fly   740 QWAET-----DYSTQWCYENFIQYRSMKRARDVREQLVGLMQRVEIDMVSCLPETVNVRK 794
            .|.:.     ..|.:||           |.|.:.||.              |.|.||:|:
Zfish   651 AWVQVKADRGSGSRKWC-----------RRRGLEEQR--------------LYEMVNLRR 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 213/589 (36%)
DEXDc 269..408 CDD:238005 61/138 (44%)
HELICc 491..581 CDD:197757 38/89 (43%)
HA2 651..735 CDD:214852 35/83 (42%)
OB_NTP_bind 770..869 CDD:285018 6/25 (24%)
dhx34XP_017207416.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.