DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cb and tdrd9

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_001123984.1 Gene:tdrd9 / 553222 ZFINID:ZDB-GENE-090313-193 Length:1342 Species:Danio rerio


Alignment Length:782 Identity:215/782 - (27%)
Similarity:357/782 - (45%) Gaps:163/782 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 QLASARFHFGAKDAKAEEEYELLLDDQIDFIQALTLDGSREKSSSRQPELTEKERKRLTLDETRR 250
            |.|:.|....||.|:||:....:..|     :|.:...|.||..|   :...:.|||..|.....
Zfish    19 QFANIRITNEAKKAEAEDNATEVRSD-----KAFSELSSPEKEKS---DDGNQRRKRAQLPTGPG 75

  Fly   251 S------------LPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVPQYLVEAGFTKDKKMIGC 303
            :            ||:...:::|::.::.:.|:||.|.||||||||:||::::   ...::.|.|
Zfish    76 TSPPSLASYEYPILPITKNRQELVSLIENNSVVIIRGATGSGKTTQLPQFILD---HYAERNIPC 137

  Fly   304 ----TQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCTSDRTILKYMTDGTLHREFLSEPDL 364
                ||||::.|..:|..||.|....||:.|||.:..|...::.|.|.|:|.|.|.::.:|...|
Zfish   138 NLVVTQPRKIGATGIARWVARERKCTLGSLVGYQVGLEKMATEHTKLIYVTTGVLLQKLVSSKTL 202

  Fly   365 ASYSVMIIDEAHERTLHTDILFGLVKDIARFRPE-LKLLISSATLDAEKFSAFF--------DDA 420
            ..||.:.|||.|||:...|.|..:|:.:.|.... :|:::.|||::..:|:.:|        :.|
Zfish   203 TEYSHIFIDEVHERSEELDFLLLVVRKLLRSNSRYVKVILMSATINCIEFAEYFGSPIRNQMNPA 267

  Fly   421 PIFRIPGRRYPVDIFY---------------TKAPEADYIDA----CCVSVLQI----------- 455
            .:|.:.|..|.|:.:|               ...|:..||..    ..||::|.           
Zfish   268 YVFEVEGAPYAVEEYYLDELKTMLPVGVNLDLTLPQDPYITEEMYNVAVSLIQSFDEMEAKDHRR 332

  Fly   456 -----HATQP-LGDILVFLTGQDEIETCQEVLHDRVKRLGSKIRELIVIPVYANLPSDMQAKIFE 514
                 ..|.| .|.:||||.|..||:..:|.|...|:      :.|.|.|:::.:..:.|..:|.
Zfish   333 SEQTGSTTHPERGSVLVFLPGLAEIQYMKEALSKLVR------KRLQVYPLHSTVTLEEQNGVFL 391

  Fly   515 PTPPNARKVILATNIAETSLTIDNIIYVIDPGFAKQNNFNSRTGMESLMVVPISKASANQRAGRA 579
            ...|..||:||:|||||:|:|:.::.||||....:|...:..|....|.:...||.|.|||.|||
Zfish   392 VPVPGYRKIILSTNIAESSVTVPDVKYVIDFCLVRQLACDKETNYRCLRITWASKTSCNQRRGRA 456

  Fly   580 GRTAPGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGIND--LIHFDFLDPP---PH 639
            ||.:.|.|:||.|...:::|:.:.::||:.|..|.:.:|.:|.|.:.|  .:....|.||   ..
Zfish   457 GRVSKGFCYRLVTRHFWENEIPNFSIPEMLRSPLASTLLKVKLLDMGDPRSVLSTALTPPILGDI 521

  Fly   640 ETLVLALEQLYALGALNH-----HGELTKLGRRMAEFPVDPMMGKMLLASEKYKCSEEMVTIAAM 699
            |..||.|:|:.||...::     .|:||.|||.:|:.|||..:||:::....:.|.||.:.|||.
Zfish   522 ERTVLQLKQIGALSVQSNSQRQFDGDLTFLGRVLAQLPVDLQLGKLIVLGHVFGCLEECLIIAAS 586

  Fly   700 LSVNSAIFYRPKDKIIHADTARKNF-NHMHGDHLSLLQVYNQWAETDYST-------------QW 750
            ||:.| .|..|..:.:....::.:| .::..|.::.:..:..|    |::             :|
Zfish   587 LSLKS-FFAMPSLQQLAGYRSKLSFAQNVPSDFIAYVNAFKAW----YTSRAKGELRHPKDELEW 646

  Fly   751 CYENFIQYRSMKRARDVREQLVGLMQRVEIDMVSCLPETVNVRKAATAGYFYHVARLSKGGHYKT 815
            ..||.||   :||.|:|.|....|.:||                   :.:..|::..|....|.:
Zfish   647 GKENCIQ---IKRIREVAELFEDLKKRV-------------------SRFNMHISSSSNPTDYTS 689

  Fly   816 IKHNQTVMIHPNSSLFEELPRWVLYHELVFTSKEYMRQVIEIESKWLLEVAPHYYKAKELEDSTN 880
            : |.|               |::|             ||:...:     :.|:|:...|:::...
Zfish   690 L-HKQ---------------RFIL-------------QVVIAGA-----LFPNYFSQGEIDEQLA 720

  Fly   881 KK 882
            .|
Zfish   721 SK 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 201/729 (28%)
DEXDc 269..408 CDD:238005 54/143 (38%)
HELICc 491..581 CDD:197757 33/89 (37%)
HA2 651..735 CDD:214852 27/89 (30%)
OB_NTP_bind 770..869 CDD:285018 13/98 (13%)
tdrd9NP_001123984.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 31..81 13/57 (23%)
DEXDc 84..262 CDD:214692 60/180 (33%)
DEXDc 106..247 CDD:238005 54/143 (38%)
DEAH box. /evidence=ECO:0000250|UniProtKB:Q14BI7 211..214 2/2 (100%)
Helicase_C 343..459 CDD:278689 45/121 (37%)
HA2 530..622 CDD:214852 28/92 (30%)
TUDOR 851..972 CDD:278965
TUDOR 905..954 CDD:119391
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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