DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cb and Zcchc17

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_001102737.1 Gene:Zcchc17 / 500555 RGDID:1565267 Length:241 Species:Rattus norvegicus


Alignment Length:88 Identity:20/88 - (22%)
Similarity:43/88 - (48%) Gaps:14/88 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 EEPDSEEESRLKDLQERD--EFASRLKKRDD------DRTRNVVDSTGGRRAIEEATKRLKLEHE 73
            ||.:.:||::.:.|::.|  :.:||.:|::.      ||..:..||..     .|:....|..|.
  Rat   160 EEEEEKEEAKAEGLEKPDPTKNSSRKRKKEKKKKKHRDRKSSDCDSPD-----SESDTGKKARHT 219

  Fly    74 DRDKIVPHLRLQSRRQYLEKRKD 96
            .:|...|. :.:.::::.:|.|:
  Rat   220 AKDSKAPK-KKKKKKKHKKKHKE 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557
DEXDc 269..408 CDD:238005
HELICc 491..581 CDD:197757
HA2 651..735 CDD:214852
OB_NTP_bind 770..869 CDD:285018
Zcchc17NP_001102737.1 S1_pNO40 13..86 CDD:240191
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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