DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cb and pea

DIOPT Version :10

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_610928.1 Gene:pea / 36561 FlyBaseID:FBgn0086895 Length:1242 Species:Drosophila melanogaster


Alignment Length:1002 Identity:442/1002 - (44%)
Similarity:605/1002 - (60%) Gaps:129/1002 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KNRKRTASSSSSGEEPDSEEESRLKDLQERDEFASRLKKRD-------------DD--------- 46
            ::|.|...||||.:..:....||.:..:.||.   |.:.||             ||         
  Fly   229 RDRDRRHKSSSSRDHHERRRRSRSRSTERRDR---RDRSRDCSEKMPPPSAAMTDDPEAGKIYSG 290

  Fly    47 RTRNV------VDSTGGRRAIEEATKRLKLEHEDR----DKIVPH--------LRLQSRRQYLEK 93
            :..|:      |...|.|:..|......:|..|.|    .::|..        :.:..::..|..
  Fly   291 KIANIVPFGCFVQLFGLRKRWEGLVHISQLRAEGRVTDVTEVVTRNQTVKVKVMSITGQKVSLSM 355

  Fly    94 RKDDKVAELEADILDDEYLFDESVLTKREKEEREYKKQLLNI------AKEHEKARELERI---Q 149
            ::.|:.:..:.:.|......|||:..:...........:||:      ..|||..:.:.||   :
  Fly   356 KEVDQDSGKDLNPLSHAPEDDESLRDRNPDGPFSSSTSMLNLQGNGMEGDEHESRKRVTRISSPE 420

  Fly   150 RYNMPQDLKKG--ERSEYVEVD-EFEKQPNSEQKKWEAE-------------------------- 185
            |:.:.|.:..|  :|||..:.| |....|..|..:.:.|                          
  Fly   421 RWEIKQMISSGVLDRSEMPDFDEETGLLPKDEDDEADIEIEIVEEEPPFLSGHGRALHDLSPVRI 485

  Fly   186 ------QLASARFHFGAKDAKAEEEYELLLDDQID---------FIQALTLDGSREKSSSRQ--- 232
                  .||.|.....|...:..|:..|..:.:|:         :|..|..|.||..:::.:   
  Fly   486 VKNPDGSLAQAAMMQSALSKERREQKMLQREQEIEAMPTSLNKNWIDPLPEDESRSLAANMRGMA 550

  Fly   233 ---PELTE-------------KERKRLTLDETRRSLPVYPFKEDLIAAVKEHQVLIIEGETGSGK 281
               ||:.|             .::..|||.|.|:|||:|..::|||.||.::|:||:.|||||||
  Fly   551 AAPPEVPEWKKHVIGGKKSSFGKKTDLTLVEQRQSLPIYKLRDDLIKAVTDNQILIVIGETGSGK 615

  Fly   282 TTQVPQYLVEAGFTKDKKMIGCTQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCTSDRTIL 346
            |||:.|||.|.|||...| |||||||||||||||.|||||.|.:||.||||:||||||||..||:
  Fly   616 TTQITQYLGECGFTARGK-IGCTQPRRVAAMSVAKRVAEEYGCRLGQEVGYTIRFEDCTSPETII 679

  Fly   347 KYMTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPELKLLISSATLDAE 411
            ||||||.|.||.|.|.:|.||||:::|||||||:|||:||||:|...:.||||||:::||||||.
  Fly   680 KYMTDGMLLRECLMEAELKSYSVIMLDEAHERTIHTDVLFGLLKTAVQKRPELKLIVTSATLDAV 744

  Fly   412 KFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYIDACCVSVLQIHATQPLGDILVFLTGQDEIET 476
            |||.:|..||||.||||.:||::.|||.||.||:||..::|:|||..:|.||||:|||||:||:|
  Fly   745 KFSQYFFKAPIFTIPGRTFPVEVLYTKEPETDYLDASLITVMQIHLREPPGDILLFLTGQEEIDT 809

  Fly   477 CQEVLHDRVKRLGSKIRELIVIPVYANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIY 541
            ..|:|::|:|.||..:.|||::|||:.|||:||.:||:|.|..:|||::||||||||||||.|.|
  Fly   810 ACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPAGSRKVVIATNIAETSLTIDGIFY 874

  Fly   542 VIDPGFAKQNNFNSRTGMESLMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNTVP 606
            |:||||.||..:||:|||:||:|.|||:|:|.|||||||||.|||.:||||..||:.|:....||
  Fly   875 VVDPGFVKQKVYNSKTGMDSLVVTPISQAAAKQRAGRAGRTGPGKTYRLYTERAYRDEMLPTPVP 939

  Fly   607 EIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGALNHHGELTKLGRRMAEF 671
            ||||.||...||.||.:|||||:||||:|.||.|:||:|||||::|.||:..|.||:||||||||
  Fly   940 EIQRTNLATTVLQLKTMGINDLLHFDFMDAPPVESLVMALEQLHSLSALDDEGLLTRLGRRMAEF 1004

  Fly   672 PVDPMMGKMLLASEKYKCSEEMVTIAAMLSVNSAIFYRPKDKIIHADTARKNFNHMHGDHLSLLQ 736
            |::|.:.|||:.|...:||:|::||.:||||.: :|||||||...||..:..||...||||:||.
  Fly  1005 PLEPNLSKMLIMSVALQCSDEILTIVSMLSVQN-VFYRPKDKQALADQKKAKFNQAEGDHLTLLA 1068

  Fly   737 VYNQWAETDYSTQWCYENFIQYRSMKRARDVREQLVGLMQRVEIDMVSCLPETVNVRKAATAGYF 801
            |||.|....:|..||||||:|.|::||::|||:||:|:|.|.::|:||....:|.::||..:|:|
  Fly  1069 VYNSWKNNKFSNAWCYENFVQIRTLKRSQDVRKQLLGIMDRHKLDVVSAGKNSVRIQKAICSGFF 1133

  Fly   802 YHVARLSKGGHYKTIKHNQTVMIHPNSSLFEELPRWVLYHELVFTSKEYMRQVIEIESKWLLEVA 866
            .:.|:......|:|:..:|.|.|||:|:||...|.||:|||||.|:|||||:|..|:.|||:|.|
  Fly  1134 RNAAKKDPQEGYRTLVDSQVVYIHPSSALFNRQPEWVIYHELVQTTKEYMREVTTIDPKWLVEFA 1198

  Fly   867 PHYY------------KAKELEDSTNK 881
            |.::            |.:.||...||
  Fly  1199 PSFFRFSDPTKLSKFKKNQRLEPLYNK 1225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 PTZ00121 <6..267 CDD:173412 77/372 (21%)
HrpA 251..>868 CDD:441249 368/616 (60%)
peaNP_610928.1 GH2-like_DHX8 7..74 CDD:409668
S1_DHX8_helicase 285..363 CDD:240189 11/77 (14%)
HrpA 578..>1203 CDD:441249 373/626 (60%)
Blue background indicates that the domain is not in the aligned region.

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