DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)37Cb and Dhx38

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:XP_006255639.1 Gene:Dhx38 / 292007 RGDID:1310345 Length:1227 Species:Rattus norvegicus


Alignment Length:960 Identity:388/960 - (40%)
Similarity:568/960 - (59%) Gaps:99/960 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SGKNRKRTASSSSSGEEP--------------------------------DSEEESRLKDLQERD 34
            |.::|.|:..|.||.:.|                                |.||.......:||.
  Rat   249 STRDRDRSVRSKSSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDGEEGIAFDTEEERQ 313

  Fly    35 EFASRLKKRDDDRTRNVVDSTGGRRAIEEATKRLKLEHEDRDKIVPHLRLQSRRQYLEKRKDDKV 99
            ::..  .:|..||...::|     ...:|....|....||        .::.|.|:|.|:|..::
  Rat   314 QWED--DQRQADRDWYMMD-----EGYDEFHNPLAYSSED--------YVRRREQHLHKQKQKRI 363

  Fly   100 AELEADILDDEYLFDES-VLTK----REKEEREYKKQLLNIAKEHEKAREL------ERIQRYNM 153
            :.....|.:|...::.: :||.    |.:.:.::::.  |.||.|.....|      .||.....
  Rat   364 SAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEED--NAAKVHLMVHNLVPPFLDGRIVFTKQ 426

  Fly   154 PQ----------DL----KKGERSEYVEVDEFEKQPNSEQKKWEAEQLASARFH--FGAKDAKAE 202
            |:          ||    :||.::.....::.|:: .::.|.||   ||..:..  .|.|  |.|
  Rat   427 PEPVIPVKDATSDLAIIARKGSQTVRKHREQKERR-KAQHKHWE---LAGTKLGDIMGVK--KEE 485

  Fly   203 EEYELLLDD-QIDF-IQALTLDGSREKSSSRQPELTEKERKRLTLDETRRSLPVYPFKEDLIAAV 265
            |..:.:.:| ::|: .:....|..:|||     |.:.:..|:.::.|.|:.||::..:::|:..:
  Rat   486 EPDKAMTEDGKVDYRTEQKFADHMKEKS-----EASSEFAKKKSILEQRQYLPIFAVQQELLTII 545

  Fly   266 KEHQVLIIEGETGSGKTTQVPQYLVEAGFTKDKKMIGCTQPRRVAAMSVAARVAEEMGVKLGNEV 330
            :::.::|:.||||||||||:.|||.:.|:| |..||||||||||||||||.||:||||..||.||
  Rat   546 RDNSIVIVVGETGSGKTTQLTQYLHQDGYT-DYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEV 609

  Fly   331 GYSIRFEDCTSDRTILKYMTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIARF 395
            ||:||||||||:.|::||||||.|.||.|.|.||..||.:|:||||||:|:||:||||::::...
  Rat   610 GYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLLREVVAR 674

  Fly   396 RPELKLLISSATLDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYIDACCVSVLQIHATQP 460
            |.:|||:::|||:||:||:|||.:.|||.||||.:||||.::|.|:.||::|.....||:|.:..
  Rat   675 RSDLKLIVTSATMDADKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGA 739

  Fly   461 LGDILVFLTGQDEIETCQEVLHDRVKRLGSKIRELIVIPVYANLPSDMQAKIFEPTPPNARKVIL 525
            .||||:|:.||::||...:.:.:.::.| .....|.|:|:|:.||||:|||||:..|...||.|:
  Rat   740 PGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIV 803

  Fly   526 ATNIAETSLTIDNIIYVIDPGFAKQNNFNSRTGMESLMVVPISKASANQRAGRAGRTAPGKCFRL 590
            ||||||||||:|.|::|||.|:.|...||.|.||::|.:.|||:|:||||:||||||.||:||||
  Rat   804 ATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRL 868

  Fly   591 YTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHETLVLALEQLYALGAL 655
            ||..|||:||...|||||||.||.|.||:||:||:.||:.|.|:||||.:.::.::.||:.||||
  Rat   869 YTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGAL 933

  Fly   656 NHHGELTKLGRRMAEFPVDPMMGKMLLASEKYKCSEEMVTIAAMLSVNSAIFYRPKDKIIHADTA 720
            ::.|.||..||.|.|||:||.:.|||:.|....||.|::.|.:|||| .|||||||.:...:|..
  Rat   934 DNTGGLTSTGRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSV-PAIFYRPKGREEESDQI 997

  Fly   721 RKNFNHMHGDHLSLLQVYNQWAETDYSTQWCYENFIQYRSMKRARDVREQLVGLMQRVEIDMVSC 785
            |:.|.....|||:.|.||.||...:|||.||.::||..::|::.|:||.||..:|.:..:.:.||
  Rat   998 REKFAVPESDHLTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASC 1062

  Fly   786 LPETVNVRKAATAGYFYHVARLSKGGHYKTIKHNQTVMIHPNSSLF--EELPRWVLYHELVFTSK 848
            ..:...|||...|.||:..|:|...|.|..|:......:||.||||  ...|.:::|||||.|:|
  Rat  1063 GTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTK 1127

  Fly   849 EYMRQVIEIESKWLLEVAPHYYKAKELEDS--TNKKMPKVAGRA---EMA 893
            |||:.|..::.:||.|:.|.:|..|:...|  .|::..|....|   |||
  Rat  1128 EYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMA 1177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 323/646 (50%)
DEXDc 269..408 CDD:238005 89/138 (64%)
HELICc 491..581 CDD:197757 51/89 (57%)
HA2 651..735 CDD:214852 40/83 (48%)
OB_NTP_bind 770..869 CDD:285018 38/100 (38%)
Dhx38XP_006255639.1 DUF3984 <190..>299 CDD:289881 7/49 (14%)
DEXDc 526..713 CDD:214692 111/187 (59%)
DEXDc 551..687 CDD:238005 89/136 (65%)
HELICc 758..861 CDD:197757 54/103 (52%)
HA2 930..1012 CDD:214852 40/82 (49%)
OB_NTP_bind <1063..1146 CDD:285018 32/82 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D113216at33208
OrthoFinder 1 1.000 - - FOG0000059
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100085
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X141
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.720

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