DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cb and smgl-2

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_001294374.1 Gene:smgl-2 / 177135 WormBaseID:WBGene00021365 Length:1089 Species:Caenorhabditis elegans


Alignment Length:929 Identity:253/929 - (27%)
Similarity:410/929 - (44%) Gaps:206/929 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 DDKVAELEADILDDEYLFDESVLTKREKEEREYKKQLLNIAKEHEKARELERIQRY-NMPQDLKK 159
            |.:..|.....|...:|.||...:...:.|:..:::|::..:        :.||.| |.....:|
 Worm     5 DQEEYEKHRGALFRHFLPDEPGTSGNRRGEKSTEQELIDTQR--------KSIQSYFNRFFRERK 61

  Fly   160 GERSEYVEVDEF--------EKQPNSEQKKWEAEQLASARFHFGAKDAKAEEEYELLLDDQIDFI 216
            ||.:::.:|:..        :......:.:::.|.|.......|.........:|......:.|.
 Worm    62 GETNDHFDVNRVKFDDLGIPQDTGGLNRIRFKGENLGIMPTQLGHITPWLYRHFEYAYHVALQFN 126

  Fly   217 QALTLDGSREKSSSRQPELTEKERKRLTLDETRRSLPVYPFKEDLIAAVKEHQVLIIEGETGSGK 281
            |                  .:|.:|...|.:.::.||:.....:::..:|.:||||:.|:||.||
 Worm   127 Q------------------HQKFQKLQKLRKLQKELPIAERAGEIVELLKTNQVLIVAGDTGCGK 173

  Fly   282 TTQVPQYLVEAGFTKDKKMIGCTQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCTSDRTIL 346
            :|||||||::||||.    :.||||||:|..::|.|||.|...:.|:||.:.||||...|.:|.|
 Worm   174 STQVPQYLLKAGFTG----VACTQPRRIACTALARRVAYETLNQYGSEVAFQIRFETTKSQKTKL 234

  Fly   347 KYMTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPELKLLISSATLDAE 411
            .::|:|.|.|:...:..|..|:|:|:||.|||.|.:|:|.||::|:...|.:|||::.|||::.:
 Worm   235 LFLTEGLLLRQMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCTKRDDLKLILMSATINLD 299

  Fly   412 KFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYIDACCVSVLQIHATQP---------------- 460
            .|..:|:.||:.::|||.:|:|:.:  .|...:||.   |..:.|...|                
 Worm   300 LFKGYFEGAPVVQVPGRLFPIDVRW--HPIKQFIDQ---SDKKTHKIDPEPYLKILELIDKQFPS 359

  Fly   461 --LGDILVFLTGQDEIETCQEVLHDRVKRLGSKIRELIVIPVYANLPSDMQAKIFEPTPPNARKV 523
              .||.|:||.|..||    .::.:.:|.........|::.:::.|..:.|.|:|:..|...||.
 Worm   360 TQRGDALIFLNGVAEI----SMVAEHLKNYAELTNGWIILMLHSTLSVEEQDKVFDQAPVGIRKC 420

  Fly   524 ILATNIAETSLTIDNIIYVIDPGFAKQNNFNSRTGMESLMVVPISKASANQRAGRAGRTAPGKCF 588
            ||:||:||||:|||.|.:|||.|..........||.:.|....:||||||||.||||||.||.|:
 Worm   421 ILSTNVAETSVTIDGIRFVIDSGKVNLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGICY 485

  Fly   589 RLYTAWAYKHELEDNTVPEIQRINLGNAVLMLKALGIN-DLIHFDFLDPPPHETLVLALEQLYAL 652
            |||:...:: :::|.||.||.|::|....|.:.:|.:. |...|.|::.|..:.|...||.|...
 Worm   486 RLYSQEQFE-KMDDFTVSEINRVSLQEMALKMISLNLGLDPRTFPFIEKPSEDVLNEGLEVLKFQ 549

  Fly   653 GAL-NHHGE---LTKLGRRMAEFPVDPMMGKMLLASEKYKC----SEEMVTIAAMLSVNSAI--- 706
            ..| :..|:   ||.||..:::.||:..:.|||:    |.|    .|.|:|:||.|||.|..   
 Worm   550 RVLRSDRGDILTLTALGNMVSKLPVEVPIAKMLV----YGCVVDELEVMLTVAAGLSVQSPFTNR 610

  Fly   707 FYRPKDKIIHADTARKNFNHMHGDHLSLLQVYNQW----AETDYSTQWCYENFI----------- 756
            .||..:.:    ..|.:.....||..:|:.::.:|    |....:.:|..||.|           
 Worm   611 SYRELEIV----ERRASLTSPLGDPFTLISIFREWVLQKAFEGTARRWTMENGIDEHRLYEISKL 671

  Fly   757 --QYRSM---------------------------------------KRARDVREQLVGLMQ---- 776
              |||.:                                       :|..|.|::::...:    
 Worm   672 RAQYRQILEDAGLVEKASAAETGEDDSRQRRIDQGEKRKLFDLKKSQRNNDRRQKVLNANKHFDK 736

  Fly   777 ----------RVEIDMVSCLPETV------------NVRKA--------------ATAGYFYHVA 805
                      ..|.|.:....:||            |:||.              ..||.:.:.:
 Worm   737 ILEDKEEEDLEAEKDPLKADVKTVEFLLSHKQRDVENIRKTHKISRKTAEVVRVIIAAGLYPNFS 801

  Fly   806 RLSKGGHY----KTIKHNQT---VMIHPNSSL----------------FEELPRWVLYHELVFTS 847
            .|.....|    :...|.:.   ..||||||:                |..|.:...|..|:.|:
 Worm   802 ILDPVNKYGYGQEMFTHTRLKPFTQIHPNSSIAQYHPETIDPRQGSDGFSRLHQIPFYGLLLETT 866

  Fly   848 KEYMRQVIEIESKWLLEVA 866
            |.|:..|:.:.:.:.|.||
 Worm   867 KPYICNVMPVPAVYTLLVA 885

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 231/794 (29%)
DEXDc 269..408 CDD:238005 67/138 (49%)
HELICc 491..581 CDD:197757 38/89 (43%)
HA2 651..735 CDD:214852 27/94 (29%)
OB_NTP_bind 770..869 CDD:285018 29/160 (18%)
smgl-2NP_001294374.1 DEXDc 130..330 CDD:214692 84/205 (41%)
DEXDc 161..296 CDD:238005 67/138 (49%)
Helicase_C 350..480 CDD:278689 49/133 (37%)
HA2 561..635 CDD:214852 25/81 (31%)
OB_NTP_bind <775..888 CDD:285018 24/111 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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