DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)37Cb and rha-2

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_498895.1 Gene:rha-2 / 176207 WormBaseID:WBGene00015525 Length:1148 Species:Caenorhabditis elegans


Alignment Length:1060 Identity:285/1060 - (26%)
Similarity:461/1060 - (43%) Gaps:269/1060 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRTASSSSSGEEPDSEE------ESRLKDLQERDEFASRLKKRDDDRTRNVVDSTGGRRAIEEAT 65
            ||.....::.|:.|:.|      |.| |.|::..|                ..:|||::....|.
 Worm     3 KRKTKEDNASEDYDANELMIVPGEKR-KKLEKSGE----------------KSATGGKKNRNFAK 50

  Fly    66 KR--LKLEHEDRDKIVPHLRLQSRRQYLEKRKDDKVAELEADILDDEYLFDESVLTKREKEEREY 128
            ::  .||..:.:.|:.   .:|||:. |::.:::..|.|....||...|...|..||        
 Worm    51 EKEVAKLTKQAKRKLA---AVQSRKA-LKQTQEELFAGLAEFQLDPSKLCQLSSSTK-------- 103

  Fly   129 KKQLLNIAKEHEKARELERIQRYNMPQDLK----------KGERSEYVEVDEFEKQPNSEQKKWE 183
                  ::||.|||..        .|:.||          |..:.:|...|:   :.:||:::.|
 Worm   104 ------LSKEPEKAPV--------FPEKLKVFSGKTKTEAKRTQQDYYPTDD---ESSSEEEEEE 151

  Fly   184 AEQLASARFHFGAKDAK-----AEEEYELL----LDDQIDFIQALTLD------GSREKSSSRQ- 232
            .|         |..|.:     .|.:.|.:    :|:.||......||      ...|:|.:.. 
 Worm   152 EE---------GDNDIEDAGNTVEVKIEPIDLDDVDEAIDGNPETNLDQIVVKREDDEESDNEDI 207

  Fly   233 ---PELTEKERKRLTLD------ETRRSLPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVPQY 288
               |..|...||::.::      ::|..||::..:..::.|:.|:.|.::.||||||||||:||:
 Worm   208 LALPTTTVINRKKVIVERSKEIQKSRAELPIFAEEMRIVEAINENLVTVVCGETGSGKTTQIPQF 272

  Fly   289 LVEAGFTKDKKMIGCTQPRRVAAMSVAARVAEEMGVKLG--NEVGYSIRFEDCTSDRTILKYMTD 351
            |.|||:..:.::||.|:||||||:::|.||    ||:|.  :||.|.||:|...|:.|.:.:|||
 Worm   273 LYEAGYASEGELIGITEPRRVAAIAMAQRV----GVELAKPDEVSYQIRYEGTRSETTNILFMTD 333

  Fly   352 GTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPE----LKLLISSATLDAEK 412
            |.|.:|...:..|..|||::|||||||::::|:|.|::..|...|.:    |:|:|.||||..:.
 Worm   334 GVLMKEMEQDVMLKKYSVILIDEAHERSMYSDVLIGMLSRIVPLRSKTARPLRLVIMSATLRLDD 398

  Fly   413 FS--AFFD--DAPIFRIPGRRYPVDIFYTKAPEADYIDACCVSVLQIHATQPLGDILVFLTGQDE 473
            |:  ..|.  ...:.::..|::||.:.:.|....|||.:......:||.|.|.|.||||:|||.|
 Worm   399 FTHKKLFPLLTPKVIKVDARQFPVSVHFEKRTPDDYIASAFRKTCRIHETLPPGAILVFVTGQHE 463

  Fly   474 I---------------ETCQ--EVLHDRVKRLGSKIRE--------------------------- 494
            :               ||.:  |||....|....|..|                           
 Worm   464 VKQLITKLKKRYPVVYETDKNGEVLVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFEDVDDGL 528

  Fly   495 ----------------------------------------------LIVIPVYANLPSDMQAKIF 513
                                                          |..:|:|:.|....|.::|
 Worm   529 MDGDDMNERGAAEAFDDYEEFENGDGDLSDGKVENSIGAPPADCEPLYCLPLYSLLSMGKQRRVF 593

  Fly   514 EPTPPNARKVILATNIAETSLTIDNIIYVIDPGFAKQNNFNSRTGMESLMVVPISKASANQRAGR 578
            :.||...|..:::||:|||||||..:.||||.||.|:..::|.||:....|..||:||.:|||||
 Worm   594 DETPAGMRLCVISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQASGDQRAGR 658

  Fly   579 AGRTAPGKCFRLYTAWAYKH--ELEDNTVPEIQRINLGNAVLMLKALGINDLIHFDFLDPPPHET 641
            |||.:.|..:|||::..|:.  :..|   |||........||.||::.|..:::|.|...|..:.
 Worm   659 AGRISAGHAYRLYSSAVYQDFVKFAD---PEILSKPADQLVLHLKSMNIVKVVNFPFPSAPDEQM 720

  Fly   642 LVLALEQLYALGALNH-------HGELTKLGRRMAEFPVDPMMGKMLLASEKYKCSEEMVTIAAM 699
            |..|.::|..||||:.       ...:||||:.:|.||:.|...|.:..::::......:.:.::
 Worm   721 LESAEKRLCRLGALSESTKNGKTEARITKLGKTLAVFPLAPSYAKFIAMADQHNLMSHAILLISL 785

  Fly   700 LSVNSAIFYRPKDKIIHADTARKNFNHMH------------------GDHLSLLQVYNQWAETDY 746
            |||...:.  |... :..||..:....|.                  ||...|:...:...:..|
 Worm   786 LSVREPLI--PVSS-LRGDTPEETKELMKNVLKERRRWCSHTGARRLGDLKVLMHAASVAEQIKY 847

  Fly   747 STQWCYENFIQYRSMKRARDVREQLVGLMQRVEIDMVSC-----------LPETVN-----VRKA 795
            :.:.|.:..::.:::..||.:|:||..::.      .||           ||...:     :|:.
 Worm   848 NARECEKVGLRVKALVEARKLRQQLTNIVN------ASCKKEHAAALDSDLPPPTDQQAQLLRQM 906

  Fly   796 ATAGYFYHVAR----------LSKGGHYKTIKHNQTVMIHPNSSLFEELPRWVLYHELV-FTSKE 849
            ..|.:...:||          :.||. |:|......|.|.|.|.:|.|.|.:|:|.||| ...|:
 Worm   907 VVASFSDRLARRVDRSVGQEEVQKGA-YETTLIKGHVFIDPCSVVFTEEPEFVIYQELVQVNEKK 970

  Fly   850 YMRQVIEIESKWLLEVAPHY 869
            .|..|..::.:||..:|..|
 Worm   971 LMTSVCAVDKEWLSRLAESY 990

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 231/814 (28%)
DEXDc 269..408 CDD:238005 67/144 (47%)
HELICc 491..581 CDD:197757 41/162 (25%)
HA2 651..735 CDD:214852 22/108 (20%)
OB_NTP_bind 770..869 CDD:285018 32/125 (26%)
rha-2NP_498895.1 HrpA 218..989 CDD:224557 227/787 (29%)
DEXDc 254..394 CDD:238005 67/143 (47%)
P-loop_NTPase <350..>477 CDD:304359 43/126 (34%)
HELICc 577..662 CDD:197757 39/84 (46%)
HA2 730..822 CDD:214852 20/94 (21%)
OB_NTP_bind 870..990 CDD:285018 32/126 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D354219at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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