DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)37Cb and F52B5.3

DIOPT Version :9

Sequence 1:NP_609946.1 Gene:l(2)37Cb / 35192 FlyBaseID:FBgn0086444 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_492260.1 Gene:F52B5.3 / 172615 WormBaseID:WBGene00009922 Length:1425 Species:Caenorhabditis elegans


Alignment Length:1114 Identity:247/1114 - (22%)
Similarity:429/1114 - (38%) Gaps:358/1114 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 FDESVLTKR------EKEEREYKKQLL-NIAKEHEKARELE---RIQRYNMPQDLKKGE---RSE 164
            ||.|.:..|      .||.|....::: :..|..:|...||   |.||..|.:.....|   :|.
 Worm    23 FDASRVLPRGTDNDTRKEYRRVANEIIRSFLKSGQKNTTLEPMGRDQRKVMHEVALLNEMTTKSH 87

  Fly   165 YVEVDEF---EKQPNSEQKK-WEAEQLASARFHFGAKDAKAEEEYELLLDDQIDFI---QALTLD 222
            ..|.|.:   .|:.|...|. ..|.:..:..|....|.:|..|::.:..::..:|:   |...:.
 Worm    88 GREPDRYMILSKRVNRLSKSTLVATEPITPSFECLQKLSKFVEKHPITREEMDEFLTETQTKQMH 152

  Fly   223 GSREKSSSRQPELTEKERKRLTLDETRRSLPVYPFKEDLIAAVKEHQVLIIEGETGSGKTTQVPQ 287
            .::...|.|. .:..|.:....|.:.|.|||...:.:.::.::....|:||.|.||.||||||||
 Worm   153 TTKGHISDRM-VIPPKSKCSKELQKVRNSLPASKYCDQVLKSISSCNVVIISGGTGCGKTTQVPQ 216

  Fly   288 YLVEAGFTKDKKM-IGCTQPRRVAAMSVAARVAEEMGVKLGNEVGYSIRFEDCTSDRTILKYMTD 351
            ::::.....:|.: :..|||||:||:|:|.|||.|.|..:|..|||.:|.:...||.|:|.|.|.
 Worm   217 FILDEAHENNKHVRVMVTQPRRIAAISIAERVARERGEPIGRTVGYQVRLDSRRSDDTVLTYCTT 281

  Fly   352 GTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPELKLLISSATLDA--EKFS 414
            |.|.|...|:|..:..:.:::||.|||.::||.|...:::..:.||:||:::.|||::.  :.||
 Worm   282 GVLLRMLTSDPVASGITHIVMDEIHEREINTDYLLIALRECLKMRPDLKVILMSATIEGNMQLFS 346

  Fly   415 AFFDD--APIFRIPGRRYPVDIFY----------------------------------------- 436
            .:|::  ..:.||..|.:.|.:||                                         
 Worm   347 NYFENHSMDVIRIESRAFDVKVFYLDQILAMTGYQPPESKAFFSTAEYEEEDWKDEIEAVEREEK 411

  Fly   437 -------------------------TK----------------APEADYID-------------- 446
                                     ||                .|:.|.||              
 Worm   412 DKAKQRAADSSLSTLSKPVTKMAANTKRNSPIEEREWTSGPCSTPDGDIIDERAMRQYMNIIGNP 476

  Fly   447 ------------------------------------------ACCV------------------- 450
                                                      .|.:                   
 Worm   477 DIRPVITVEFRPTTPNSVFINDVKYTTNPNQSAQALLQQKRERCLMPRGPLTFTCENPASTTKSP 541

  Fly   451 ----------------------------------------------------------------- 450
                                                                             
 Worm   542 PSPTPTLGISSGLAKFTPFGGFGEKQRISTLLEKKFKEELKTALPDRTVYYHPQMNDVVDKTDFS 606

  Fly   451 --------------------------SVLQIHATQPL-GDILVFLTGQDEIETCQEVLHDRVKRL 488
                                      .|:|..|..|: |.|||||.|.::|:...:.: |..|..
 Worm   607 KLRFGEKYNLFYGSSSNNSVDYVLLDQVIQYLADSPVFGTILVFLPGYEDIQQMLKAI-DCWKNS 670

  Fly   489 GSKIRELIVIPVYANLPSDMQAKIFEPTPPNARKVILATNIAETSLTIDNIIYVIDPGFAKQNNF 553
            ...::.:||:|:::.:.|.....||:..|.:.||:||||||||.|:||:::|:|:|.|..|:.:|
 Worm   671 LKNMKNVIVLPLHSQMTSINHGDIFKSVPKDTRKIILATNIAEASITIEDVIFVVDTGKVKEKSF 735

  Fly   554 NSRTGMESLMVVPISKASANQRAGRAGRTAPGKCFRLYTAWAYKHELEDNTVPEIQRINLGNAVL 618
            :....:.:|.|.||::::|:||:|||||.|.|.|.||||...| :.:.:..:.|::|..:.:..|
 Worm   736 DHEAKLSTLTVKPIARSNADQRSGRAGRVANGYCIRLYTEQEY-NSMPETQIAEMKRAAIYDVTL 799

  Fly   619 MLKALGINDLIHFDFL----DPPPHETLVLALEQLYALGAL-----------NHHG--------- 659
            ..|......|...:||    :||..|:::.|:..|..:||.           |..|         
 Worm   800 HAKLFAPKTLKISEFLSLAPEPPEKESILQAITFLEQIGAFYTPIKIYDNSGNEEGLKNDEEAEN 864

  Fly   660 -------ELTKLGRRMAEFPVDPMMGKMLLASEKYKCSEEMVTIAAML-SVNSAIFYRPKDKIIH 716
                   |||.|||.||..|:||.:.:|||.....||...:|.:.|:| |....:....:|:.:.
 Worm   865 SENPEDPELTDLGRLMARLPLDPQLSRMLLFGLALKCLTPIVNLVALLASREPYVLALSEDRDLQ 929

  Fly   717 A----DTARKNFNHMHGDHLSLLQVYNQWAETDYS--TQWCYENFIQYRSMKRARDVREQLVGLM 775
            :    :.|:::.:    |||..:::.|::...:.|  .|:|.::|:.:.:|:..:..|.||:..:
 Worm   930 SKMKFEMAQQDLS----DHLLYIRLCNEFCSKNNSQQNQFCRDHFLNFSTMRMVQGTRRQLLREL 990

  Fly   776 QRVEIDMVS-------------------CLPETVNVRKAATAGYFYHVARLSKGGHYKTIK--HN 819
            .|.::..:|                   |.|   .::....||.:..:...:...:.|.::  ::
 Worm   991 VRAKLINISPNRDVLTVLTDHHFNQFSQCWP---MIQAVIAAGCYPFIGVSASESNLKKVQTFND 1052

  Fly   820 QTVMIHPNSSL---------FEELPR--WVLYHELVFTSKE---YMRQVIEIESKW-LLEVAPHY 869
            :...:||:|.:         .|:.||  :|.:.|:.....:   .|:.|..|.|.. ||...|..
 Worm  1053 KPAFLHPSSMVKKQIVKMGKSEKSPRVEYVAFQEMCQMPSDRSLSMKTVTVIPSMTALLFTGPIR 1117

  Fly   870 YKAKELEDS 878
            ...:.:||:
 Worm  1118 LDERTIEDN 1126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)37CbNP_609946.1 HrpA 222..867 CDD:224557 215/972 (22%)
DEXDc 269..408 CDD:238005 59/139 (42%)
HELICc 491..581 CDD:197757 36/89 (40%)
HA2 651..735 CDD:214852 29/115 (25%)
OB_NTP_bind 770..869 CDD:285018 24/134 (18%)
F52B5.3NP_492260.1 R3H 21..100 CDD:214647 19/76 (25%)
DEXDc 189..369 CDD:214692 67/179 (37%)
DEXDc 198..338 CDD:238005 59/139 (42%)
eIF3_subunit 393..>470 CDD:285763 6/76 (8%)
Helicase_C 647..764 CDD:278689 46/117 (39%)
HA2 869..948 CDD:214852 25/82 (30%)
OB_NTP_bind 984..1116 CDD:285018 23/134 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1643
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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