DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ddc and Csad

DIOPT Version :9

Sequence 1:NP_724163.1 Gene:Ddc / 35190 FlyBaseID:FBgn0000422 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_068518.1 Gene:Csad / 60356 RGDID:621030 Length:493 Species:Rattus norvegicus


Alignment Length:543 Identity:130/543 - (23%)
Similarity:215/543 - (39%) Gaps:92/543 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ISNTIPTKQTDGNGKANISPDKLDPKVSIDMEAPEFKDFAKTMVDFIAEYLENIRE-----RRVL 65
            ::::.|.:..||           ||   :.:|| ..:|....:||      |.||:     .:|.
  Rat     1 MADSKPLRTLDG-----------DP---VAVEA-LLRDVFGIVVD------EAIRKGTNASEKVC 44

  Fly    66 PEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLS 130
            ...:|..||.|:......:.|..:.:::....||...|...|...|:..|...:.: |:...:::
  Rat    45 EWKEPEELKQLLDLELQSQGESRERILERCRAVIHYSVKTGHPRFFNQLFSGLDPH-ALAGRIIT 108

  Fly   131 GAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAK 195
            .::....:|:..:|....:|..::..|..::         ....|.||.....|.|.:.|:..|:
  Rat   109 ESLNTSQYTYEIAPVFVLMEEEVLKKLRALV---------GWNTGDGVFCPGGSISNMYAINLAR 164

  Fly   196 AKKLKEVKE-----LHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQ----SENHRM 251
            .::..:.|:     |.|          |..:.|.:.|.|:.:.....|:...||:    .|..:|
  Rat   165 FQRYPDCKQRGLRALPP----------LALFTSKECHYSITKGAAFLGLGTDSVRVVKADERGKM 219

  Fly   252 RGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICP 316
            ....||:.|....|||.:||....|.|||...|||.||....|..:|.||:|||||:.||..:..
  Rat   220 IPEDLERQISLAEAEGSVPFLVSATSGTTVLGAFDPLDAIADVCQRHGLWLHVDAAWGGSVLLSR 284

  Fly   317 EYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVN---------AFNVDPLYLKHDMQ 372
            .:|||:.||:.|||..:||||.:.....|||:.|:|.|.::.         .|..|..|      
  Rat   285 THRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRDTSNLLKRCHGSQASYLFQQDKFY------ 343

  Fly   373 GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN 437
            ..|.|.....:..|||...||||.:.:..|.:.|:..|.:.....:...:.......|||..|..
  Rat   344 NVALDTGDKVVQCGRRVDCLKLWLMWKAQGGQGLEWRIDQAFALTRYLVEEIKKREGFELVMEPE 408

  Fly   438 MGLVCF-----RLKGSNER--------------NEALLKRINGRGHIHLVPAKIKDVYFLRMAIC 483
            ...|||     .|:|..|.              .|.::|:  |...|...|...: ..|.||.:.
  Rat   409 FVNVCFWFVPPSLRGKKESPDYSQRLSQVAPVLKERMVKK--GTMMIGYQPHGTR-ANFFRMVVA 470

  Fly   484 SRFTQSEDMEYSWKEVSAAADEM 506
            :......|:::...|:.....::
  Rat   471 NPILVQADIDFLLGELERLGQDL 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DdcNP_724163.1 Pyridoxal_deC 70..446 CDD:278699 103/398 (26%)
CsadNP_068518.1 DOPA_deC_like 89..489 CDD:99743 107/428 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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