DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ddc and Gad2

DIOPT Version :9

Sequence 1:NP_724163.1 Gene:Ddc / 35190 FlyBaseID:FBgn0000422 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_036695.1 Gene:Gad2 / 24380 RGDID:2653 Length:585 Species:Rattus norvegicus


Alignment Length:500 Identity:114/500 - (22%)
Similarity:211/500 - (42%) Gaps:61/500 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 FAKTMVDFIAEYLENI--RERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHW 106
            |.:.:::.:.:|:...  |..:|:....|..|.........::|:..::::...:..:...:...
  Rat   110 FLQDVMNILLQYVVKSFDRSTKVIDFHYPNELLQEYNWELADQPQNLEEILTHCQTTLKYAIKTG 174

  Fly   107 HSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACS 171
            | |::.....|......:.||.|:.......||:..:|....||.|.   |.||.|:    :...
  Rat   175 H-PRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVT---LKKMREI----IGWP 231

  Fly   172 GGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLL 236
            ||.|.|:.....:.|.:.|:|.|:.|...||||     .....:.:|:.:.|:.:|.|:::....
  Rat   232 GGSGDGIFSPGGAISNMYAMLIARYKMFPEVKE-----KGMAAVPRLIAFTSEHSHFSLKKGAAA 291

  Fly   237 GGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK 297
            .|:...||    ..|..:|..:.||:.|.:...:|.:||....|.|||...|||.|.....:..|
  Rat   292 LGIGTDSVILIKCDERGKMIPSDLERRILEVKQKGFVPFLVSATAGTTVYGAFDPLLAVADICKK 356

  Fly   298 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNV 362
            :.:|:|||||:.|...:..:::..:.|:|.|:|..:||||.|.|...|||:.:::...:.:...:
  Rat   357 YKIWMHVDAAWGGGLLMSRKHKWKLNGVERANSVTWNPHKMMGVPLQCSALLVREEGLMQSCNQM 421

  Fly   363 DPLYL----KH-DMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGD 422
            ...||    || |:.....|.   .:..||.....|||.:.|..|....:|||.:....|:...:
  Rat   422 HASYLFQQDKHYDLSYDTGDK---ALQCGRHVDVFKLWLMWRAKGTTGFEAHIDKCLELAEYLYN 483

  Fly   423 LCVADSRFELAAE-----INMGLVCF-------RLKGSNERNEALLKRINGRGHIHLVPAKIKD- 474
            :......:|:..:     .|   |||       |:...||...:.|.::     ..::.|::.: 
  Rat   484 IIKNREGYEMVFDGKPQHTN---VCFWFVPPSLRVLEDNEERMSRLSKV-----APVIKARMMEY 540

  Fly   475 -------------VYFLRMAICSRFTQSEDMEYSWKEVSAAADEM 506
                         |.|.||.|.:.....:|:::..:|:.....::
  Rat   541 GTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIERLGQDL 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DdcNP_724163.1 Pyridoxal_deC 70..446 CDD:278699 99/396 (25%)
Gad2NP_036695.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Pyridoxal_deC 138..509 CDD:278699 98/389 (25%)
Substrate binding. /evidence=ECO:0000250 181..183 0/1 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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