DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and GAD1

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_013976.1 Gene:GAD1 / 855291 SGDID:S000004862 Length:585 Species:Saccharomyces cerevisiae


Alignment Length:555 Identity:111/555 - (20%)
Similarity:199/555 - (35%) Gaps:174/555 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 KDVLGDIS-RVIKPGLTHWQSPHMH--AYYPTSTS--------------------YPSIVGEMLA 95
            |.:..|:| ::|...||...:||::  ::..|.|:                    ||.:: |:..
Yeast    65 KGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLI-ELTQ 128

  Fly    96 SGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPAHFQHASDGPGGGVIQGSASEAVLVAVLAAR 160
            ....::...|..:|                          .:.|.|....|| |||:::..||.:
Yeast   129 RCISMLAQLWHANP--------------------------DEEPIGCATTGS-SEAIMLGGLAMK 166

  Fly   161 EQAVANYRESHPELSESEVRGRLVAYSSDQSNSC---IEKAGVLAAMPIRLLPAG--EDFVLRGD 220
            ::.....:.:..:.|:..:         ..|::|   :||......:..||:|..  ...:|..:
Yeast   167 KRWEHRMKNAGKDASKPNI---------IMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPE 222

  Fly   221 TLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKV----W------LHVDAAYA 275
            :|...::|:.      :.|...||||.|...:::|.::.|..:.:.    |      :|.|.| :
Yeast   223 SLWDYVDENT------IGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIHADGA-S 280

  Fly   276 GG-------------AFALEECSDLRKGLD--RVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDS 325
            ||             |:.:|     |.|.:  ||.|:|.:.|||.|.......:..||     :|
Yeast   281 GGFIIPFGFEKEHMKAYGME-----RWGFNHPRVVSMNTSGHKFGLTTPGLGWVLWRD-----ES 335

  Fly   326 FNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQ 390
            ...|.:..|.|:.|..:.....::..|   .|:.:..:..|.:||..|.|...:..:.:|:.|..
Yeast   336 LLADELRFKLKYLGGVEETFGLNFSRP---GFQVVHQYFNFVSLGHSGYRTQFQNSLFVARAFSF 397

  Fly   391 LVLKDSR----FELV-----------APRA--------------LGLVCFR---------PKGDN 417
            .:|..|:    ||:|           ||::              :.||.|:         |:...
Yeast   398 ELLNSSKLPGCFEIVSSIHESIENDSAPKSVKDYWEHPQAYKPGVPLVAFKLSKKFHEEYPEVPQ 462

  Fly   418 EITTQLLQRLMDRKKIYMV------KAEHAG--RQFLRFVVCGMDTKASDIDFAWQEIESQLTDL 474
            .|.:.||     |.:.:::      ||....  ::.|| ||...:.|.........:|||.||.|
Yeast   463 AILSSLL-----RGRGWIIPNYPLPKATDGSDEKEVLR-VVFRSEMKLDLAQLLIVDIESILTKL 521

  Fly   475 QAEQSLVARKSGNVGDLAQHFQIHLSTENATHEKS 509
            ......|..            .|.|::|.....||
Yeast   522 IHSYEKVCH------------HIELASEQTPERKS 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 87/450 (19%)
GAD1NP_013976.1 Glu-decarb-GAD 41..522 CDD:130848 104/519 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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