DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and Gadl1

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001382689.1 Gene:Gadl1 / 73748 MGIID:1920998 Length:522 Species:Mus musculus


Alignment Length:510 Identity:119/510 - (23%)
Similarity:201/510 - (39%) Gaps:77/510 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 KAAIDYIADYLENIRDDDVLPNVE----------PGYLLDLLPTEMPEEPEAWKDVLGDISRVIK 65
            ||...::.:....|.::.||...:          |..|..||..||.:..|:...:|.....|| 
Mouse    44 KAGEKFVEEACRLIMEEVVLKATDVNEKVCEWQPPEQLRQLLDLEMRDTGESQDKLLKLCQDVI- 107

  Fly    66 PGLTHW----QSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFL 126
                |:    ..|...........|.|:...::........:::..||....:|..|   |.|.:
Mouse   108 ----HFSVKTNHPRFFNQLYAGLDYYSLAARIITEALNPSIYTYEVSPVFLLVEEAV---LKKMI 165

  Fly   127 KLPAHFQHASDG---PGGGVIQGSASEAVLVAVLAAREQAVANYRESHPELSESEVRG--RLVAY 186
            :.....:  .||   |||.|....|..             :|.||.. |::.|..:.|  ||:.:
Mouse   166 ECVGWKE--GDGIFNPGGSVSNMCAMN-------------LARYRHC-PDIKEKGLSGLPRLILF 214

  Fly   187 SSDQSNSCIEKAGVLAAMPIRLLPAGEDFVL------RGDTLRGAIEEDV----AAGRIPVICVA 241
            :|.:.:..::||.       ..|..|...|.      ||..:...:|:.:    ..|.:|.:..|
Mouse   215 TSAECHYSMKKAA-------SFLGIGTQNVYFVETDGRGKMIPEDLEKQIWQARQEGAVPFLVCA 272

  Fly   242 TLGTTGTCAYDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHKFML 306
            |.|||...|:|.::.::.|||...:||||||::.|.|....:...|..|:.|.||:.:|.||.::
Mouse   273 TSGTTVLGAFDPLDEIAEVCERHGLWLHVDASWGGSALVSRKHRRLLHGIHRADSVAWNPHKMLM 337

  Fly   307 VNFDCSAMWLRDANKVVDS-FNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLG 370
            ....|||:.::|.:.::.. ::....||..:.:......|.....|...||..|.|.|:|::.||
Mouse   338 AGIQCSALLVKDKSDLLKKCYSAKATYLFQQDKFYDVSYDTGDKSIQCSRRPDAFKFWMTWKALG 402

  Fly   371 AEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCF--RPKGDNE-------------IT 420
            ..||...|.:...|::.....:.|...|:|:.......|||  .|....|             :.
Mouse   403 TSGLEERVNRAFALSRYLVDEIKKREGFKLLMEPEYTNVCFWYIPPSLREMEEGPEFWRKLSLVA 467

  Fly   421 TQLLQRLMDRKKIYMVKAEHAGR-QFLRFVVCGMDTKASDIDFAWQEIESQLTDL 474
            ..:.:::|.:..:.:....|.|: .|.|.||........|:||...||:|...|:
Mouse   468 PAIKEKMMKKGSLMLGYQPHRGKVNFFRQVVISPQVSREDMDFLLDEIDSLGRDM 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 98/400 (25%)
Gadl1NP_001382689.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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