DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and Csad

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_068518.1 Gene:Csad / 60356 RGDID:621030 Length:493 Species:Rattus norvegicus


Alignment Length:491 Identity:118/491 - (24%)
Similarity:193/491 - (39%) Gaps:95/491 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 EPGYLLDLLPTEMPEEPEAWKDVLGDISRVIKPGLTHWQSPHMHAYYPTSTSYP----------- 87
            ||..|..||..|:..:.|:.:.:|.....||              :|...|.:|           
  Rat    48 EPEELKQLLDLELQSQGESRERILERCRAVI--------------HYSVKTGHPRFFNQLFSGLD 98

  Fly    88 --SIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPAHFQHASDG---PGGGVIQGS 147
              ::.|.::........:::..:|....:|..|:..|...:.     .:..||   |||.:    
  Rat    99 PHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLKKLRALVG-----WNTGDGVFCPGGSI---- 154

  Fly   148 ASEAVLVAVLAAREQAVANYRESHPELSESEVRG--RLVAYSSDQSNSCIEKAGV---LAAMPIR 207
               :.:.|:..||.|       .:|:..:..:|.  .|..::|.:.:..|.|...   |....:|
  Rat   155 ---SNMYAINLARFQ-------RYPDCKQRGLRALPPLALFTSKECHYSITKGAAFLGLGTDSVR 209

  Fly   208 LLPAGEDFVLRGDTLRGAIEEDV----AAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWL 268
            ::.|.|    ||..:...:|..:    |.|.:|.:..||.|||...|:|.:::::.||:...:||
  Rat   210 VVKADE----RGKMIPEDLERQISLAEAEGSVPFLVSATSGTTVLGAFDPLDAIADVCQRHGLWL 270

  Fly   269 HVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDS-------- 325
            |||||:.|..........|..|:.|.||:.:|.||.:.....|||:.|||.:.::..        
  Rat   271 HVDAAWGGSVLLSRTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRDTSNLLKRCHGSQASY 335

  Fly   326 -FNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFE 389
             |..|:.|......|..        .:..|||...||:|:.::..|.:||...:.:...|.:...
  Rat   336 LFQQDKFYNVALDTGDK--------VVQCGRRVDCLKLWLMWKAQGGQGLEWRIDQAFALTRYLV 392

  Fly   390 QLVLKDSRFELVAPRALGLVCF-------RPKGDNEITTQLLQRLMDRKKIYMVK--------AE 439
            :.:.|...||||.......|||       |.|.::...:|.|.::....|..|||        ..
  Rat   393 EEIKKREGFELVMEPEFVNVCFWFVPPSLRGKKESPDYSQRLSQVAPVLKERMVKKGTMMIGYQP 457

  Fly   440 HAGR-QFLRFVVCGMDTKASDIDFAWQEIESQLTDL 474
            |..| .|.|.||.......:||||...|:|....||
  Rat   458 HGTRANFFRMVVANPILVQADIDFLLGELERLGQDL 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 96/419 (23%)
CsadNP_068518.1 DOPA_deC_like 89..489 CDD:99743 103/430 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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