DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and ddc

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001011289.1 Gene:ddc / 496742 XenbaseID:XB-GENE-983285 Length:485 Species:Xenopus tropicalis


Alignment Length:474 Identity:231/474 - (48%)
Similarity:327/474 - (68%) Gaps:0/474 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRVIK 65
            |:|.|||:.||..:||:|||||.|....|.|:||||||..|:|...|||.|.:::::.|:.|||.
 Frog     1 MNASEFRKRGKDMVDYVADYLEQIESRQVFPDVEPGYLRPLIPDSAPEEGETYEEIIKDVERVIM 65

  Fly    66 PGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPA 130
            ||:|||.||:..||:||.:|||:::.:||....|.|||||..||||||||.|::|||.|.:.||.
 Frog    66 PGVTHWHSPYFFAYFPTGSSYPALLADMLCGAIGCIGFSWASSPACTELETVMLDWLGKMIGLPE 130

  Fly   131 HFQHASDGPGGGVIQGSASEAVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCI 195
            .|...:.|.|||||||:||||.|:|:||||.:.....:..:|:|:|:|:..|:|||||||::|.:
 Frog   131 QFLAGNKGEGGGVIQGTASEATLMALLAARTKVTRRLQAENPKLTEAEIVSRMVAYSSDQAHSSV 195

  Fly   196 EKAGVLAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAV 260
            |:||:::.:.::.:|:.|:||.||..|:.|:|||.|.|.||:...||||||.:||:|::..|..|
 Frog   196 ERAGLISGVRMKKIPSDENFVARGQALKKALEEDKAEGLIPIFFCATLGTTNSCAFDNLLELGPV 260

  Fly   261 CEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDS 325
            |....:|:|:||||||.||...|...|.||::..||.|||.||::|||||||..|::..:.::.:
 Frog   261 CNAENIWMHIDAAYAGSAFICPEFRYLMKGIEFADSFNFNPHKWLLVNFDCSTFWVKKRSDLIGA 325

  Fly   326 FNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQ 390
            |.:|.:||::..:....:.|:||||||||||||:||:|..||..|.:||:.|:|||:.||.:|.:
 Frog   326 FKMDPVYLQYDQQESGLVTDYRHWQIPLGRRFRSLKLWFVFRIYGVKGLQVHIRKHVGLAHEFLE 390

  Fly   391 LVLKDSRFELVAPRALGLVCFRPKGDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDT 455
            .|.||.:||:.||..|||||||.||.||:...|||::.:.|||::|.........|||.||....
 Frog   391 CVKKDDQFEICAPVILGLVCFRLKGSNELNKALLQKINNSKKIHIVPCCLGDTFVLRFAVCARTV 455

  Fly   456 KASDIDFAWQEIESQLTDL 474
            ::|.|.|||:.|:...|:|
 Frog   456 ESSHIQFAWKHIKELTTEL 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 188/378 (50%)
ddcNP_001011289.1 Pyridoxal_deC 35..414 CDD:365998 188/378 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 1 1.000 - - FOG0000865
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.