DRSC/TRiP Functional Genomics Resources

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Protein Alignment amd and SecS

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_649556.3 Gene:SecS / 40681 FlyBaseID:FBgn0037347 Length:478 Species:Drosophila melanogaster


Alignment Length:337 Identity:71/337 - (21%)
Similarity:134/337 - (39%) Gaps:89/337 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   182 RLVAYSSDQSNSCIEKAGVLAAMPIRLLPAGEDFVLRGDTLRGAI----EEDVAAGRIPVICVAT 242
            |.|.:|.....||.:.......:|: ::|.    :::|::|...:    |:..:.|...::|   
  Fly   163 RYVLWSRIDQKSCFKAITATGLVPV-VIPC----LIKGESLNTNVDLFREKIKSLGVDSILC--- 219

  Fly   243 LGTTGTC----AYDDIESLSAVCEEFKVWLHVDAAYAGGAFALE-----ECSDLRKGLDRVDSLN 298
            |.||.:|    ..|||..:|.:.:::::...|:.||  |..|.|     ||:: |.|  |:|...
  Fly   220 LYTTTSCFAPRNSDDIAEVSKLSKQWQIPHLVNNAY--GLQAKEIVNQLECAN-RVG--RIDYFV 279

  Fly   299 FNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVW 363
            .:..|.:||..         .:.:|.|||            :|.:.|............::|.|.
  Fly   280 QSSDKNLLVPV---------GSAIVASFN------------ESVLHDVASTYAGRASGSQSLDVL 323

  Fly   364 ITFRTLGAEGLR----------NHVRKHI-ELAKQFEQLVLKDSRFELVAPRALGLVCFRPKGDN 417
            :|..:||..|.|          |::|::: :.|:...::|: ||||..:   :|.:......||.
  Fly   324 MTLLSLGRNGFRLLFDQRGENFNYLRENLRKFAEPRGEIVI-DSRFNSI---SLAITLATLAGDQ 384

  Fly   418 EITTQLLQRLMDRKKI----YMVKAEHA---GRQFLRF-------------VVCGMDTKASDID- 461
            ..:...|..::..:.:    .:|..::.   |.:||.|             |..|:.....:|| 
  Fly   385 MKSITKLGSMLHMRGVSGARVIVPGQNKTIDGHEFLDFGSHRSNLQVPYLTVAAGIGITREEIDK 449

  Fly   462 ------FAWQEI 467
                  ..|.:|
  Fly   450 FFDIFNKCWNQI 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 57/255 (22%)
SecSNP_649556.3 AAT_I 12..457 CDD:302748 69/331 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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