DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and Gad1

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001261396.1 Gene:Gad1 / 38484 FlyBaseID:FBgn0004516 Length:510 Species:Drosophila melanogaster


Alignment Length:499 Identity:124/499 - (24%)
Similarity:221/499 - (44%) Gaps:49/499 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EFREFGKAAIDYIADYLE--NIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRVIKPG 67
            |.|||....||.:.|:::  |.|::.||....|..:..||..::|:.....:.::.|.:..:|..
  Fly    32 ETREFLLKVIDVLLDFVKATNDRNEKVLDFHHPEDMKRLLDLDVPDRALPLQQLIEDCATTLKYQ 96

  Fly    68 LTHWQSPHMHAYYPTSTSYP--SIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPA 130
            :   ::.|.|.:...|....  |:.||.|.:......|::..:|....:|.||:..:.:.:    
  Fly    97 V---KTGHPHFFNQLSNGLDLISMAGEWLTATANTNMFTYEIAPVFILMENVVLTKMREII---- 154

  Fly   131 HFQHASDGPGGG--VIQGSASEAVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNS 193
                   |..||  ::....|.:.|.|.||||.:...||:| |..:.   :.|.||.::|||.:.
  Fly   155 -------GWSGGDSILAPGGSISNLYAFLAARHKMFPNYKE-HGSVG---LPGTLVMFTSDQCHY 208

  Fly   194 CIEKAGVLAAMPIR---LLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIE 255
            .|:....:..:...   ::|:.|...:....|...|.|..|.|.||....||.|||...|:|||.
  Fly   209 SIKSCAAVCGLGTDHCIVVPSDEHGKMITSELERLILERKAKGDIPFFVNATAGTTVLGAFDDIN 273

  Fly   256 SLSAVCEEFKVWLHVDAAYAGGAFALEECSDLR-KGLDRVDSLNFNLHKFMLVNFDCSAMWLRDA 319
            :::.:|:::..|:|:|||:.||.....:....| .|::|.||:.:|.||.|.....||.:..::.
  Fly   274 TIADICQKYNCWMHIDAAWGGGLLMSRKHRHPRFTGVERADSVTWNPHKLMGALLQCSTIHFKED 338

  Fly   320 NKVV--DSFNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHI 382
            ..::  :..:.:.:::..|....|.  |.....|..||.....|:|:.:|..|.||......:.:
  Fly   339 GLLISCNQMSAEYLFMTDKQYDISY--DTGDKVIQCGRHNDIFKLWLQWRAKGTEGFEQQQDRLM 401

  Fly   383 ELAK-QFEQLVLKDSRFELV------------APRALGLVCFRPKGDNEI--TTQLLQRLMDRKK 432
            ||.: |.:::..:..||.|:            .|:.|..|....|.:.|:  ...:::..|.:|.
  Fly   402 ELVQYQLKRIREQSDRFHLILEPECVNVSFWYVPKRLRGVPHDAKKEVELGKICPIIKGRMMQKG 466

  Fly   433 IYMVKAEHAGRQ--FLRFVVCGMDTKASDIDFAWQEIESQLTDL 474
            ..||..:...|:  |.|.::.......:|:||...||.....||
  Fly   467 TLMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 97/401 (24%)
Gad1NP_001261396.1 Pyridoxal_deC 64..434 CDD:395219 94/389 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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