DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and basl-1

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_498210.1 Gene:basl-1 / 175779 WormBaseID:WBGene00015467 Length:509 Species:Caenorhabditis elegans


Alignment Length:506 Identity:179/506 - (35%)
Similarity:272/506 - (53%) Gaps:56/506 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRVIK 65
            ||:.:.|..||..|:.:|:|.:.||....:|:|:|||:...:|:..|..||:|:.|.||:.:||.
 Worm     1 MDSAKLRVEGKKMIEIVANYWDGIRTRKPIPDVKPGYIEKSVPSNPPTTPESWEKVFGDLEKVIF 65

  Fly    66 PGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPA 130
            .|.:||..||..||:.....|.||:.::::||.|.:||:||..|..||||.:.:|||.....||.
 Worm    66 NGSSHWNHPHFFAYFSAGIGYHSILADIISSGLGSVGFTWIACPPITELEKITLDWLVDLTSLPV 130

  Fly   131 HFQHASDGPGGGVIQGSASEAVLVAVLAARE-------------QAVANYRESH----------- 171
            .|:::..|.|.|:||.|||::.|:|::.||.             |.:.|....|           
 Worm   131 EFKNSHPGHGCGIIQSSASDSTLIAIMTARAAKVEFIKQNPSTFQWLINSTSEHLRSISYWTPVN 195

  Fly   172 -----------PELSESEVRGRLVAYSSDQSNSCIEKAGVLAAMPIRLLPA----GEDFVLRGDT 221
                       |...:..|....|.|.:||::|.:||..:||.:..|.|.:    .|::.:....
 Worm   196 RTIHDSTDIITPYYHDPRVFKNFVMYFTDQAHSSVEKGAMLAGVRFRKLRSVRGYMENYEMDSKI 260

  Fly   222 LRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDAAYAGGAFAL-EECS 285
            |..|||:|.:.|.||.:...|:|||.|||.||:|.:..:|::..::||       ||||. :|..
 Worm   261 LIDAIEQDRSRGFIPFMVALTVGTTATCAADDVEKIGQICQKEGLYLH-------GAFAFCDEFK 318

  Fly   286 DLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQ 350
            .|..||..|||.|.:|||..::||||..:|.::.......:|||.:||.|::  ||...|:||.:
 Worm   319 YLVNGLKYVDSYNTDLHKAGMINFDCCPLWFKNGTYASRYYNVDPVYLAHEY--QSSNMDYRHLE 381

  Fly   351 IPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPRALGLVCFRPK- 414
            :|||||||:||||.|.|.:|.|.:|.:.||.:.||..|.:::::..:|||..|..||:..||.| 
 Worm   382 VPLGRRFRSLKVWFTMRNMGVEKIREYQRKTVSLALLFTKIIVEGDKFELFTPPHLGMATFRLKN 446

  Fly   415 ---GDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDF 462
               .|||   :|||.:...::|::..:...|...|||.|....|...|:.|
 Worm   447 HTNSDNE---RLLQAINRDRRIHLGISMVHGVYVLRFCVGSPLTNEEDVHF 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 151/418 (36%)
basl-1NP_498210.1 AAT_I 1..508 CDD:302748 179/506 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 41 1.000 Domainoid score I8514
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.815392 Normalized mean entropy S2516
OMA 1 1.010 - - QHG57772
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11999
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.840

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