DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and bas-1

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_001021151.1 Gene:bas-1 / 175778 WormBaseID:WBGene00000239 Length:523 Species:Caenorhabditis elegans


Alignment Length:518 Identity:205/518 - (39%)
Similarity:302/518 - (58%) Gaps:62/518 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRVIK 65
            ||:::.|..||..:|::|||.:.|||...||:|:|||:.||:|.:.|..||.|..:..|:..|:.
 Worm     1 MDSQKLRTEGKKMLDFVADYWDGIRDRKPLPDVKPGYINDLVPAQAPATPEDWAKIFDDLENVVV 65

  Fly    66 PGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPA 130
            .|.|||..||..||:||:.||.||:.::|:.|...|||:|...|:.||||:..:||:...:.||.
 Worm    66 NGATHWHHPHFFAYFPTALSYQSIMADILSGGIAGIGFTWKSCPSMTELEMSSLDWVVDLMGLPE 130

  Fly   131 HFQHASDGPGGGVIQGSASEAVLVAVLAAREQAVANYRESHPE----LSES-------------- 177
            ||:::.:|||.|:||.:||::.::|::|||...|...: |.|.    :||:              
 Worm   131 HFKNSHNGPGCGIIQSTASDSTMIAIMAARATHVERIK-SEPTFMKWVSETGVGKTLKNIFDRVK 194

  Fly   178 ---------------EVRG-------------RLVAYSSDQSNSCIEKAGVLAAMPIRLLPAGED 214
                           |..|             |.|.|.|||::|.:||..:|:|:.:|.|.|...
 Worm   195 VNKTLVARASVTVDDEASGMITPYFHDPTVFERFVMYCSDQAHSSVEKGAMLSAVRMRKLKATRG 259

  Fly   215 FV----LRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWLHVDAAYA 275
            |:    :..:||:.||:||.|.|.||.:.:||:|||.:|..|.::.|..||.|..::||||||||
 Worm   260 FLGNYGVSRETLQNAIKEDRARGYIPFMFLATVGTTCSCGVDQVDELGPVCVEEGLYLHVDAAYA 324

  Fly   276 GGAFAL-EECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEG 339
             |.||| ||...|.:|::.|||.||||||..:||||||.||.::...|...||||.:||.|::  
 Worm   325 -GTFALCEEFKYLIRGMEHVDSFNFNLHKAGMVNFDCSPMWFKNGTHVSRYFNVDAVYLAHEY-- 386

  Fly   340 QSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFELVAPR 404
            |:...|:||.|:.||||||:||:|...|.:|.:.:|.::|:...||.:|.:|:|::.:||...|:
 Worm   387 QTTASDYRHLQVALGRRFRSLKIWFVLRNMGVDKIREYLRRTELLAAEFSKLILENGKFEHFVPQ 451

  Fly   405 ALGLVCFRPK----GDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFA 463
            .|||.|||.|    .|||   :|...:.|.::|::|.:...|..|||.|||...|...||.:|
 Worm   452 HLGLTCFRLKNSTNADNE---KLCNAINDDRRIHLVPSTVHGTYFLRMVVCSQLTTLDDIIYA 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 171/429 (40%)
bas-1NP_001021151.1 AAT_I 35..461 CDD:302748 171/429 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 41 1.000 Domainoid score I8514
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.815392 Normalized mean entropy S2516
OMA 1 1.010 - - QHG57772
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11999
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.980

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