DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and tdc-1

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:NP_495743.1 Gene:tdc-1 / 174327 WormBaseID:WBGene00006562 Length:705 Species:Caenorhabditis elegans


Alignment Length:539 Identity:222/539 - (41%)
Similarity:320/539 - (59%) Gaps:33/539 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRVIK 65
            |...|||::||..:|||.||||||:...|:|.:|||||.||:|:|.|..||:::.|:.|..::|.
 Worm    77 MTRDEFRQYGKETVDYIVDYLENIQKRRVVPAIEPGYLKDLIPSEAPNTPESFESVMEDFEKLIM 141

  Fly    66 PGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPA 130
            ||:||||.|..|||:|...|:|||:.:||:...|.:||||...||.||||::::||..|.:.|||
 Worm   142 PGITHWQHPRFHAYFPAGNSFPSIIADMLSDAIGCVGFSWAACPAMTELELIMLDWFGKMIGLPA 206

  Fly   131 HFQHASD-GPGGGVIQGSASEAVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSC 194
            .|...:: |.||||||.||||...|.:||||.:.:...|:..|.:.|..:..:|:||.|.:::|.
 Worm   207 EFLPLTENGKGGGVIQSSASECNFVTLLAARFEVMKELRQRFPFVEEGLLLSKLIAYCSKEAHSS 271

  Fly   195 IEKAGVLAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSA 259
            :|||.::..:.:|:|.....|.|||||||.||:||...|.||.....|||||..|::|.:..:..
 Worm   272 VEKACMIGMVKLRILETDSKFRLRGDTLRNAIQEDRNLGLIPFFVSTTLGTTSCCSFDVLSEIGP 336

  Fly   260 VCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVD 324
            :|:|.::||||||||:|.||...|...|..|::...|.|.|.:|::|:|||||.||:||..|:..
 Worm   337 ICKENELWLHVDAAYSGSAFICPEFRPLMNGIEYAMSFNTNPNKWLLINFDCSTMWVRDRFKLTQ 401

  Fly   325 SFNVDRIYLKHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFE 389
            :..||.:||:|....:|  .|:|||.|||.||||:||:|...|..|.:||:.::|:|:.|||:.|
 Worm   402 ALVVDPLYLQHSWMDKS--IDYRHWGIPLSRRFRSLKLWFVIRMYGIDGLQKYIREHVRLAKKME 464

  Fly   390 QLVLKDSRFELVAPRALGLVCFRPKGDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVVCGMD 454
            .|:..|::||:|....:||||||.|||:|:...||.||....:|:||.|....|..:||.||..:
 Worm   465 TLLRADAKFEIVNEVIMGLVCFRMKGDDELNQTLLTRLNASGRIHMVPASLGDRFVIRFCVCAEN 529

  Fly   455 TKASDIDFAWQ--------------------------EIESQLTDLQ----AEQSLVARKSGNVG 489
            ....||:.|::                          .:|..:.||.    .|:.|..:.|.|..
 Worm   530 ATDKDIEVAYEIIAQATQHVLHDSVKAVIAEEDEEAVALEEMVADLNITETPEKCLTRQNSANAA 594

  Fly   490 DLAQHFQIHLSTENATHEK 508
            :..|..:..||.|....:|
 Worm   595 ESGQKLERQLSKEEILAQK 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 172/379 (45%)
tdc-1NP_495743.1 Pyridoxal_deC 111..489 CDD:278699 172/379 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.815392 Normalized mean entropy S2516
OMA 1 1.010 - - QHG57772
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 1 1.000 - - FOG0000865
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.880

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