DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment amd and Hdc

DIOPT Version :9

Sequence 1:NP_476592.1 Gene:amd / 35188 FlyBaseID:FBgn0000075 Length:510 Species:Drosophila melanogaster
Sequence 2:XP_006498847.1 Gene:Hdc / 15186 MGIID:96062 Length:681 Species:Mus musculus


Alignment Length:477 Identity:220/477 - (46%)
Similarity:306/477 - (64%) Gaps:4/477 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDISRVIKPGLTHWQSP 74
            ||..:|||:.||..:|:..|.|||:||||...||...||||::|..:.|||.|||.||:.|||||
Mouse    37 GKEMVDYISQYLSTVRERQVTPNVQPGYLRAQLPASAPEEPDSWDSIFGDIERVIMPGVVHWQSP 101

  Fly    75 HMHAYYPTSTSYPSIVGEMLASGFGVIGFSWICSPACTELEVVVMDWLAKFLKLPAHF-QHASDG 138
            |||||||..||:||::|:|||.....:||:|..||||||||:.:||||||.|.||.:| .|....
Mouse   102 HMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNIMDWLAKMLGLPEYFLHHHPSS 166

  Fly   139 PGGGVIQGSASEAVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGVLAA 203
            .||||:|.:.||:.|:|:||||:..:...:...|:.:||.:..|||||:|||::|.:||||:::.
Mouse   167 RGGGVLQSTVSESTLIALLAARKNKILAMKACEPDANESSLNARLVAYTSDQAHSSVEKAGLISL 231

  Fly   204 MPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCAYDDIESLSAVCEEFKVWL 268
            :.||.||..::|.|||:.|:.|||||...|.:||...|||||||.||:|.:..|..:|....:||
Mouse   232 VKIRFLPVDDNFSLRGEALQKAIEEDKQQGLVPVFVCATLGTTGVCAFDRLSELGPICASEGLWL 296

  Fly   269 HVDAAYAGGAFALEECSDLRKGLDRVDSLNFNLHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYL 333
            ||||||||.||...|.....:|::..||..||..|:|:|:|||:..|::|..|:..:|:|:.|||
Mouse   297 HVDAAYAGTAFLCPELRGFLEGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYL 361

  Fly   334 KHKHEGQSQIPDFRHWQIPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRF 398
            :|.:.|.:  .||.||||||.||||::|:|...|:.|.:.|:.|||...|:||.||.||..|..|
Mouse   362 RHANSGAA--TDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRSDPSF 424

  Fly   399 ELVAPRALGLVCFRPKGDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVVCGMDTKASDIDFA 463
            |:.|.|.||||.||.||.|.:|..:|:.:....:::::.|....:..:||.|....|...||...
Mouse   425 EIPAKRHLGLVVFRLKGPNCLTESVLKEIAKAGQLFLIPATIQDKLIIRFTVTSQFTTKEDILRD 489

  Fly   464 WQEIESQLTDLQAEQSLVARKS 485
            |..|: :..:|...|...::.|
Mouse   490 WHLIQ-EAANLVLSQHCTSQPS 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
amdNP_476592.1 Pyridoxal_deC 35..414 CDD:278699 191/379 (50%)
HdcXP_006498847.1 Pyridoxal_deC 62..440 CDD:365998 191/379 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57772
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000865
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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