Protein Alignment Lim3 and lhx2a

DIOPT Version :9

• Sequence 1: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Sequence 2: XP_017208320.1
• Gene: lhx2a / 795283
• ZFINID: ZDB-GENE-091118-109
• Length: 328
• Species: Danio rerio
• Alignment Length: 347
• Identity: 105/347 - (30%)
• Similarity: 151/347 - (43%)
• Gaps: 100/347 - (28%)

  Fly   120 PKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLNDK--CFARNGQLFCKEDFFKR--YGTK 180
            |.|.||..||.|||.|...||.||.:||:||.|...|..:  ||:::|.::||||::.|  ...:
Zfish    11 PVCAGCGALISDRFYLLAAERRWHERCLKCSACQTDLESELTCFSKHGDIYCKEDYYSRRFSSQR 75

  Fly   181 CSACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFYLMEDRKLICKRDYE-EAKAKGL 244
            |:.|.:||..|::|.||:|.||||.||.||.|.:.|.|||. |.|::..:.|:...: |..|...
Zfish    76 CARCHLGISATEIVMRARDLVYHLSCFSCATCHKVLLTGDH-YGMKETSVYCRAHIQRECHADLY 139

  Fly   245 YLDGS----------LDGDQP---------------------------------------NKRPR 260
            |.|.|          .|.:.|                                       :||.|
Zfish   140 YSDMSSRETNSESHTYDEESPVHRARVRRRKNNSTADHIAYSSDVSDLGVDLSERVSCQKSKRMR 204

  Fly   261 TTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWSQ 325
            |:....||.::::.:.::..|.....::|:|.|||..||:||||||.|||.:|
Zfish   205 TSFKHHQLRSMQSFFTHNHNPDAKDLKELAQKTGLTKRVLQVWFQNARAKFRR------------ 257

  Fly   326 YFRSMKGNCSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGASPHSIRGSYMHGS-- 388
                   ||       |.::.:.||       ::|::|..|         ||........|||
Zfish   258 -------NC-------LYQESIGVD-------NVSDNSTLT---------SPSVPSPELCHGSMS 292

  Fly   389 -SSPSQYPPSSRSPPPVGQGHT 409
             ||||...||..:|......|:
Zfish   293 PSSPSGTSPSQHTPSAARNTHS 314

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	25/52 (48%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	25/54 (46%)
		Homeobox	259..312	CDD:278475	21/52 (40%)
lhx2a	XP_017208320.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	1	0.910